SeedViewer Search

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SEED Viewer Annotation Page

Overview

This page offers access to the data relating to a feature. By default the Overview version of the page
is initially displayed providing the feature's function assignment, source organism, the role it performs
in a subsystem, and a graphic displaying it's genomic context.
In the graphic each line represents a different genome. The genome of the feature that is the subject of this page
is on the first line with the subject feature in red and centered in a 16kb window. Features on the same line that have
a gray shadow are functionally coupled to the subject feature. Features in different genome that share the same color or
number are similar. Clicking 'Diverse Genomes' will change the genomes in the graphic to a set that is more phylogentically
distant to the subject feature's genome.

Sequence Data

From the green bar at the top of page, selecting the 'This Protein' menu will give the user the choice of viewing the

this feature's DNA sequence, DNA with flanking sequence or amino acid sequence.

Tools

From the green bar at the top of the page, selecting the 'Tools' menu will give the user the choice of the following tools
to analyze this feature:
TMpred
TMHMM
Gram negative PSORT
Gram negative SignalP
Gram positive PSORT
Gram positive SignalP
LipoP
InterProScan
Radar
PPSearch
Gram negative CELLO
Gram positive CELLO
ProDom

Literature