SOPs

SEED standard operating procedures

To generate data that is useful to the various communities involved in the process of annotation and use of annotations, we make available our standard operating procedures.

• Annotation
  • Annotation Codes (NMPDR|SOP010) File:Annotation sop.pdf
  • Annotating a genome with the 48-hour service (NMPDR|SOP005) File:The48hrserver.pdf
  • Creation of GO-terms (NMPDR|SOP004) File:GO AND PFAM SOP.pdf
• BRC
  • Releasing GFF3 files(NMPDR|SOP006) File:Brc upload sop.pdf

• Obsolete SOPs
  • Gene calling (NMPDR|SOP001)
  • Annotation of close strain sets(NMPDR|SOP002)
  • Adding Genomes to the NMPDR (NMPDR|SOP003) File:New genome sop.pdf