SEED Viewer Manual/AlignSeqs
This page is usually loaded if you have selected a number of features in e.g. the Evidence Page and pressed an Align Sequences button. Here, the alignment is presented. The alignment software that is used is T-Coffee, a method for fast and accurate multiple sequence alignment.
On the top of the alignment, you can see a color legend for aligned regions. Below, the multiple alignment for all chosen features is displayed.