SEED Viewer Manual/FIGfamViewer

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Revision as of 19:59, 3 December 2008 by DanielaBartels (talk | contribs) (FIGfam Viewer)

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FIGfam Viewer

The table on the top of the page displays the FIGfam ID and the Functional Role associated to the FIGfam. Subsystems that are associated with members of the FIGfam are displayed in the third row (Subsystems) of the table. They are linked to the Subsystems Page of the subsystem. The FIGfam Size is the number of members of the FIGfam. The Average Sequence Length is the medium of aminoacids sequence length of the members of the FIGfam. Behind this there is a short statistics telling you the member with the Maximum length, Minimum length and the Standard Deviation.

The Member list is a table showing the ID of the member (the link leads to the Annotation Page), the Organism it belongs to, Associated Subsystem (there can be more than one) and the function of the member. You can export the list in tab-separated format using the export table button. For downloading a fasta file of the protein sequences of the members, press the Fasta button on the left.

FIGfamViewerTable.png

The bottom part of the page shows a Compare Regions View of the members of the FIGfam. The right graphics is a Compare Regions just like the one on the Annotation Page. Click here to get a description.

FIGfamViewerTree.png