Cohesion Group | Gene Nbd | Subhomology Group | Domain | Phylum | Class | Order | Family | Genus | Genome Name | Acronym | IMG Taxon ID | NCBI Taxon ID | IMG ID | SEED ID | Strain-level Gene Neighborhood | Lateral Gene Transfer? | Locus Tag | Fused Domains | Ask CDD | ACT CDD | KFGG Motif | KYGG Motif | KIGG Motif | PDB ID | # of Ask's | Hdh present? | Threonine Deaminase Present? | Citramalate Synthase Present? | Hdh-thr | Hdh-met | Hdh-min | Internal Start |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | α | Eukaryota | Fungi | Ascomycota | Saccharomycotina | Saccharomycetes | Saccharomyces | Saccharomyces cerevisiae S288c | Scer_Aa | 638208609 | 559292 | 638210220 | - | No | YER052C | cd04247 | cd04934/cd04919 | 1 | 0 | 0 | 1 | Yes | Yes | No | 638211958 | absent | ||||||
2 | α | Bacteria | Proteobacteria | Alphaproteobacteria | Rhodobacterales | Hyphomonadaceae | Hyphomonas | Hyphomonas neptunium ATCC 15444 | Hnep_Aa | 637000135 | 228405 | 638144206 | - | No | HNE_1643 | cd04248 | cd04910/cd04915 | 0 | 0 | 1 | 2 | Yes | No | No | 638144870 | absent | ||||||
3 | α | Bacteria | Firmicutes | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Lactobacillus casei ATCC 334 | Lcas_Aa | 639633028 | 321967 | 639665077 | - | No | LSEI_2152 | cd04245 | cd04911/cd04916 | 1 | 0 | 0 | 2 | Yes | No | No | 639665076 | absent | ||||||
4 | α | Bacteria | Proteobacteria | Gammaproteobacteria-lower | Enterobacteriales | Enterobacteriaceae | Sodalis | Sodalis glossinidius morsitans | Sglo_Ab | 637000270 | 343509 | 637852336 | - | Yes | SG0404 | Ask/Hdh | cd04257 | cd04921/cd04922 | 1 | 0 | 0 | 2 | Yes | Yes | No | absent | ||||||
5 | α | Bacteria | Bacteroidetes | Bacteroidetes | Bacteroidales | Bacteroidaceae | Bacteroides | Bacteroides fragilis NCTC 9343 | Bfra_Ab | 637000024 | 272559 | 637226305 | No | BF0558 | Ask/Hdh | cd04257 | cd04921/cd04922 | 1 | 0 | 0 | 3 | Yes | No | Yes | absent | |||||||
6 | α | Bacteria | Bacteroidetes | Flavobacteria | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium johnsoniae UW101 | Fjoh_Aa | 640427114 | 376686 | 640508746 | - | No | Fjoh_0535 | cd04243 | 1 | 0 | 0 | 3 | Yes | Yes | Yes | 640509711 | absent | |||||||
7 | α | Bacteria | Bacteroidetes | Sphingobacteria | Sphingobacteriales | Crenotrichaceae | Salinibacter | Salinibacter ruber DSM 13855 | Srub_Ac | 637000250 | 309807 | 637843688 | - | No | SRU_0691 | Ask/Hdh | cd04257 | cd04921/cd04922 | 1 | 0 | 0 | 4 | Yes | No | No | 637843485 | absent | |||||
8 | α | Bacteria | Proteobacteria | Gammaproteobacteria-lower | Aeromonadales | Aeromonadaceae | Aeromonas | Aeromonas hydrophila hydrophila ATCC 7966 | Ahyd_Ad | 639633004 | 380703 | 639713170 | - | No | AHA_0590 | Ask/Hdh | cd04257 | 1 | 0 | 0 | 4 | Yes | Yes | No | absent | |||||||
9 | α | Bacteria | Bacteroidetes | Sphingobacteria | Sphingobacteriales | Crenotrichaceae | Salinibacter | Salinibacter ruber DSM 13855 | Srub_Ad | 637000250 | 309807 | 637843304 | - | No | SRU_0301 | Ask/DAP decarboxylase | cd04259 | 1 | 0 | 0 | 4 | Yes | No | No | 637843485 | absent | ||||||
10 | α | Bacteria | Chlorobi | Chlorobia | Chlorobiales | Chlorobiaceae | Chlorobium | Chlorobium tepidum TLS | Ctep_Aa | 637000073 | 194439 | 637115017 | - | No | CT0095 | cd04258 | cd04912/cd04892 | 1 | 0 | 0 | 2 | Yes | No | No | absent | |||||||
11 | α | Bacteria | Bacteroidetes | Flavobacteria | Flavobacteriales | Flavobacteriaceae | Gramella | Gramella forsetii KT0803 | Gfor_Ab | 639633025 | 411154 | 639718410 | - | No | orf1536 | cd04243 | cd04912/cd04917 | 1 | 0 | 0 | 3 | Yes | Yes | No | 639717178 | absent | ||||||
12 | α | Bacteria | Acidobacteria | Solibacteres | Solibacterales | Solibacteraceae | Solibacter | Solibacter usitatus Ellin6076 | Susi_Aa | 639633060 | 234267 | 639686479 | - | No | Acid_6982 | cd04258 | cd04912/cd04917 | 1 | 0 | 0 | 2 | Yes | No | No | 639680070 | 639686527 | absent | |||||
13 | α | Eukaryota | Streptophyta | rosids | Brassicales | Brassicaceae | Arabidopsis | Arabidopsis thaliana Columbia | Atha_b | 639560100 | 3702 | 639579531 | - | No | AT5G13280 | cd04244 | cd04933/cd04918 | 1 | 0 | 0 | 2cdq | 5 | Yes | Yes | No | 639580575 | absent | |||||
14 | α | Archaea | Euryarchaeota | environmental sample | unclassified | unclassified | uncultured | uncultured methanogenic archaeon RC-I | Umet_Aa | 640427153 | 351160 | 640535568 | - | - | No | RCIX1827 | cd04244 | cd04921/cd04924 | 1 | 0 | 0 | 1 | Yes | No | Yes | 640537168 | absent | |||||
15 | α | Archaea | Euryarchaeota | Methanomicrobia | Methanomicrobiales | Methanomicrobiaceae | Methanoculleus | Methanoculleus marisnigri JR1 | Mmar-6_Aa | 640069318 | 368407 | 640114892 | - | No | Memar_0222 | cd04244 | cd04921/cd04924 | 1 | 0 | 0 | 1 | Yes | No | Yes | 640115657 | absent | ||||||
16 | α | Archaea | Euryarchaeota | Methanococci | Methanococcales | Methanocaldococcaceae | Methanocaldococc | Methanocaldococcus jannaschii DSM 2661 | Mjan_Aa | 638154505 | 243232 | 638201890 | - | No | MJ0571 | cd04244 | cd04921/cd04892 | 1 | 0 | 0 | 2hmf/3c1m/3c1n | 1 | Yes | No | Yes | 638203005 | absent | |||||
17 | α | Bacteria | Deinococcus-Th | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus geothermalis DSM 11300 | Dgeo_Aa | 641228488 | 319795 | 641230142 | - | No | Dgeo_1127 | cd04244 | cd00000/cd04892 | 1 | 0 | 0 | 1 | Yes | Yes | No | 641229624 | absent | ||||||
18 | α | Archaea | Euryarchaeota | Thermococci | Thermococcales | Thermococcaceae | Thermococcus | Thermococcus kodakaraensis KOD1 | Tkod_Aa | 638154520 | 69014 | 638207620 | - | No | TK1445 | cd04234 | 1 | 0 | 0 | 1 | Yes | No | No | 638207810 | absent | |||||||
19 | α | Archaea | Crenarchaeota | Thermoprotei | Desulfurococcales | Desulfurococcaceae | Aeropyrum | Aeropyrum pernix K1 | Aper_Aa | 638154501 | 272557 | 638188901 | - | No | APE1140 | cd04244 | cd04921 | 1 | 0 | 0 | 1 | Yes | No | No | 638188905 | absent | ||||||
20 | α | Archaea | Crenarchaeota | Thermoprotei | Sulfolobales | Sulfolobaceae | Metallosphaera | Metallosphaera sedula DSM 5348 | Msed_Aa | 640427120 | 399549 | 640507593 | - | No | Msed_1699 | cd04243 | cd04921 | 0 | 0 | 1 | 1 | Yes | No | No | 640507891 | absent | ||||||
21 | α | Bacteria | Proteobacteria | Gammaproteobacteria-lower | Enterobacteriales | Enterobacteriaceae | Escherichia | Escherichia coli K12 | Ecol_Aa | 637000106 | 83333 | 637017348 | Yes | b4024 | cd04258 | cd04932/cd04917 | 1 | 0 | 0 | 1ohi/2j0w/2j0x | 3 | Yes | Yes | No | absent | |||||||
22 | α | Bacteria | Chlamydiae | Chlamydiae | Chlamydiales | Chlamydiaceae | Chlamydia | Chlamydia trachomatis D/UW-3/CX | Ctra_Aa | 637000064 | 272561 | 637004718 | No | CT362 | cd04243 | 1 | 0 | 0 | 1 | No | No | No | absent | |||||||||
23 | α | Archaea | Euryarchaeota | Methanobacteria | Methanobacteriales | Methanobacteriaceae | Methanosphaera | Methanosphaera stadtmanae DSM 3091 | Msta_Aa | 637000163 | 339860 | 637845997 | - | No | Msp_0107 | cd04234 | cd04916/cd04872 | 1 | 0 | 0 | 1 | Yes | No | Yes | 637846377 | absent | ||||||
24 | β | Bacteria | Firmicutes | Clostridia | Thermoanaerobacter | Thermoanaerobacteriace | Moorella | Moorella thermoacetica ATCC 39073 | Mthe-3_Ab | 637000167 | 264732 | 637828995 | - | No | Moth_1067 | cd04260 | cd04914/cd04937 | 1 | 0 | 0 | 2 | Yes | No | No | 637829243 | absent | ||||||
25 | β | Bacteria | Actinobacteria | Actinobacteridae | Actinomycetales | Corynebacteriaceae | Corynebacterium | Corynebacterium glutamicum ATCC 13032 (Kitasato) | Cglu_Aa | 639279307 | 196627 | 639301219 | - | No | NCgl0247 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 2dtj | 1 | Yes | Yes | No | 639315697/639302125 | VEE | |||||
26 | β | Bacteria | Thermotogae | Thermotogae (class) | Thermotogales | Thermotogaceae | Thermotoga | Thermotoga maritima MSB8 | Tmar_Ab | 637000321 | 243274 | 637005837 | - | No | TM0547 | Hdh/Ask | cd04261 | cd04913/cd04936 | 1 | 0 | 0 | 2 | Yes | No | No | VEN | ||||||
27 | β | Bacteria | Proteobacteria | Deltaproteobacteria | Myxococcales | Myxococcacea | Anaeromyxobacter | Anaeromyxobacter dehalogenans 2CP-C | Adeh_Aa | 637000007 | 290397 | 637865144 | - | No | Adeh_3589 | cd04261 | 0 | 1 | 0 | 2 | Yes | No | No | 637863174 | 637862929 | 637865489 | VVK | |||||
28 | β | Bacteria | Firmicutes | Clostridia | Clostridiales | Clostridiaceae | Clostridium | Clostridium botulinum A ATCC 3502 | Cbot_Ba | 640427109 | 413999 | 640574950 | No | CBO3337 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 3 | Yes | No | No | 640573238 | 640573473 | MNM | ||||||
29 | β | Bacteria | Thermotogae | Thermotogae (class) | Thermotogales | Thermotogaceae | Thermotoga | Thermotoga petrophila RKU-1 | Tpet_Aa | 640427150 | 390874 | 640563799 | - | No | Tpet_1274 | cd04261 | cd04891/cd04936 | 0 | 1 | 0 | 2 | Yes | No | No | MVV | |||||||
30 | β | Bacteria | Firmicutes | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus saprophyticus saprophyticus ATCC 15305 | Ssap_Aa | 637000284 | 342451 | 637696748 | - | No | SSP1357 | cd04261 | cd04891/cd04923 | 1 | 0 | 0 | 2 | Yes | Yes | No | 637696829 | MPQ | ||||||
31 | β | Bacteria | Spirochaetes | Spirochaetes (class) | Spirochaetales | Leptospiraceae | Leptospira | Leptospira interrogans sv Copenhageni Fiocruz L1-130 | Lint_Aa | 637000150 | 267671 | 637497785 | No | LIC12909 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 1 | Yes | No | Yes | 637495490 | MEK | |||||||
32 | β | Bacteria | Cyanobacteria | Cyanobacteria | Prochlorales | Prochlorococcaceae | Prochlorococcus | Prochlorococcus marinus pastoris CCMP1986 | Pmar_Ca | 637000214 | 59919 | 637450680 | No | PMM1648 | cd04261 | cd04913/cd04936/cd04913/cd04936 | 1 | 0 | 0 | 1 | Yes | Yes | No | 637450066 | absent | |||||||
33 | β | Bacteria | Firmicutes | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacillus halodurans C-125 | Bhal-1_Aa | 637000020 | 272558 | 637059812 | - | No | BH3096 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 3 | Yes | Yes | No | 637060139 | 637057951 | 637058439 | MEQ | ||||
34 | β | Bacteria | Proteobacteria | Deltaproteobacteria | Desulfovibrionales | Desulfovibrionaceae | Desulfovibrio | Desulfovibrio desulfuricans G20 | Ddes_Aa | 637000095 | 207559 | 637782936 | - | No | Dde_2048 | cd04261 | cd04913/cd04936 | 1 | 0 | 0 | 1 | Yes | No | No | 637783633 | MEA | ||||||
35 | β | Bacteria | Proteobacteria | Epsilonproteobacter | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter jejuni jejuni NCTC 11168 | Cjej_Aa | 637000055 | 192222 | 637040134 | No | Cj0582 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 1 | Yes | No | No | 637039718 | MEQ | |||||||
36 | β | Bacteria | Proteobacteria | Deltaproteobacteria | Desulfuromonadales | Pelobacteraceae | Pelobacter | Pelobacter carbinolicus DSM 2380 | Pcar_Aa | 637000204 | 338963 | 637750598 | - | No | Pcar_1006 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 1 | Yes | No | No | 637751044 | MET | ||||||
37 | β | Bacteria | Proteobacteria | Alphaproteobacteria | Rhodospirillales | Rhodospirillaceae | Rhodospirillum | Rhodospirillum rubrum ATCC 11170 | Rrub_Aa | 637000241 | 269796 | 637824828 | - | No | Rru_A0743 | cd04261 | cd04913/cd04936 | 1 | 0 | 0 | 1 | Yes | No | No | 637826518 | VEK | ||||||
38 | β | Bacteria | Proteobacteria | Alphaproteobacteria | Rickettsiales | Rickettsiaceae | Wolbachia | Wolbachia endosymbiont of Drosophila melanogast | Wend_a | 637000339 | 163164 | 637173116 | - | No | WD0960 | cd04261 | cd00000/cd04923 | 1 | 0 | 0 | 1 | No | No | No | VLH | |||||||
39 | β | Bacteria | Proteobacteria | Gammaproteobacteria-lower | Alteromonadales | Shewanellaceae | Shewanella | Shewanella amazonensis SB2B | Sama_Aa | 639633057 | 326297 | 639780388 | - | No | Sama_1049 | cd04261 | cd04891/cd04923 | 1 | 0 | 0 | 4 | Yes | Yes | No | absent | |||||||
40 | β | Bacteria | Proteobacteria | Betaproteobacteria | Neisseriales | Neisseriaceae | Neisseria | Neisseria meningitidis FAM18 | Nmen_Aa | 639633045 | 272831 | 639828255 | No | NMC1429 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 2re1 | 1 | Yes | Yes | No | 639828004 | MER | ||||||
41 | β | Bacteria | Proteobacteria | Gammaproteobacteria-upper | Pseudomonadales | Moraxellaceae | Acinetobacter | Acinetobacter sp. ADP1 | ACIN-1a | 637000002 | 62977 | 637517791 | - | No | ACIAD1252 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 1 | Yes | Yes | No | 637516863 | MEQ | ||||||
42 | β | Bacteria | Proteobacteria | Gammaproteobacteria-upper | sulfur-oxidizing | unclassified | unclassified | Candidatus Vesicomyosocius okutanii HA | Voku_Aa | 640427107 | 412965 | 640538005 | - | No | COSY_0540 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 1 | Yes | No | No | 640538170 | VEQ | ||||||
43 | β | Bacteria | Proteobacteria | Gammaproteobacteria-upper | Pseudomonadales | Pseudomonadaceae | Pseudomonas | Pseudomonas putida F1 | Pput_Aa | 640427132 | 351746 | 640585907 | No | Pput_1442 | cd04261 | cd04913/cd04936 | 1 | 0 | 0 | 1 | Yes | Yes | No | 640588728 | 640585156 | MEQ | ||||||
44 | β | Bacteria | Chloroflexi | Dehalococcoidetes | Dehalococcoides | unclassified | Dehalococcoides | Dehalococcoides ethenogenes 195 | Deth_Aa | 637000089 | 243164 | 637121190 | - | No | DET1633 | cd04246 | cd04913/cd04936 | 0 | 1 | 0 | 1 | Yes | No | No | 637120769 | MEI | ||||||
45 | β | Bacteria | Firmicutes | Clostridia | Clostridiales | Peptococcaceae | Desulfotomaculum | Desulfotomaculum reducens MI-1 | Dred_Ab | 640069310 | 349161 | 640180336 | - | No | Dred_1167 | cd04261 | cd04913/cd04936 | 1 | 0 | 0 | 2 | Yes | No | No | 640180334 | MEN | ||||||
46 | β | Bacteria | Proteobacteria | Gammaproteobacteria-upper | Chromatiales | Ectothiorhodospiraceae | Alkalilimnicola | Alkalilimnicola ehrlichei MLHE-1 | Aehr_Aa | 637000005 | 187272 | 638126238 | - | No | Mlg_1480 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 1 | Yes | Yes | No | 638126578 | MEE | ||||||
47 | α | Bacteria | Bacteroidetes | Sphingobacteria | Sphingobacteriales | Crenotrichaceae | Salinibacter | Salinibacter ruber DSM 13855 | Srub_Ab | 637000250 | 309807 | 637843484 | - | No | SRU_0481 | cd04243 | 1 | 0 | 0 | 4 | Yes | No | No | 637843485 | absent | |||||||
48 | β | Bacteria | Proteobacteria | Gammaproteobacteria-lower | Aeromonadales | Aeromonadaceae | Aeromonas | Aeromonas salmonicida salmonicida A449 | Asal_Aa | 641522605 | 382245 | 640466692 | - | No | ASA_3812 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 4 | Yes | Yes | No | MEA | |||||||
49 | α | Archaea | Crenarchaeota | Thermoprotei | marine archaeal group 1 | Nitrosopumilaceae | Nitrosopumilus | Nitrosopumilus maritimus SCM1 | Nmar_Aa | 641228499 | 436308 | 641315811 | - | No | Nmar_0193 | cd04243 | cd00000cd04892 | 1 | 0 | 0 | 2 | Yes | No | No | 641316332 | absent | ||||||
50 | α | Archaea | Crenarchaeota | Thermoprotei | marine archaeal group 1 | Nitrosopumilaceae | Nitrosopumilus | Nitrosopumilus maritimus SCM1 | Nmar_Ab | 641228499 | 436308 | 641317409 | - | No | Nmar_1754 | cd04244 | cd04921/cd04924 | 0 | 1 | 0 | 2 | Yes | No | No | 641316332 | absent | ||||||
51 | β | Bacteria | Proteobacteria | Alphaproteobacteria | Rhodobacterales | Hyphomonadaceae | Maricaulis | Maricaulis maris MCS10 | Mmar_Aa | 637000157 | 394221 | 638141761 | - | No | Mmar10_2259 | cd04261 | cd04913/cd04936 | 1 | 0 | 0 | 3 | Yes | No | No | 638142117 | VVS | ||||||
52 | α | Bacteria | Proteobacteria | Alphaproteobacteria | Rhodobacterales | Hyphomonadaceae | Maricaulis | Maricaulis maris MCS10 | Mmar_Ac | 637000157 | 394221 | 638140576 | - | Yes | Mmar10_1098 | Ask/Hdh | cd04243 | KFGS | 0 | 0 | 3 | Yes | No | No | 638142117 | absent | ||||||
99 | α | Archaea | Euryarchaeota | Methanopyri | Methanopyrales | Methanopyraceae | Methanopyrus | Methanopyrus kandleri AV19 | Mkan_Ab | 638154507 | 190192 | 638168109 | - | No | MK0109 | cd04244 | cd04921/cd04924 | 1 | 0 | 0 | 2 | Yes | No | Yes | 638169614 | absent | ||||||
99 | α | Bacteria | Acidobacteria | Solibacteres | Solibacterales | Solibacteraceae | Solibacter | Solibacter usitatus Ellin6076 | Susi_Ab | 639633060 | 234267 | 639679600 | - | No | Acid_0052 | cd04243 | cd04892/cd04892 | 1 | 0 | 0 | 2 | Yes | No | No | 639680070 | 639686527 | absent | |||||
99 | β | Bacteria | Actinobacteria | Actinobacteridae | Actinomycetales | Frankiaceae | Frankia | Frankia sp. CcI3 | FRAN-2a | 637000116 | 106370 | 637879407 | - | No | Francci3_2071 | cd04246 | 0 | 1 | 0 | 2 | Yes | No | No | 637881051 | absent | |||||||
99 | β | Bacteria | Actinobacteria | Actinobacteridae | Actinomycetales | Frankiaceae | Frankia | Frankia alni ACN14a | Faln_Aa | 637000115 | 326424 | 638099125 | - | - | No | FRAAL2411 | cd04246 | 1 | 0 | 0 | 2 | Yes | No | No | 638102598 | absent | ||||||
99 | β | Bacteria | Actinobacteria | Actinobacteridae | Actinomycetales | Microbacteriaceae | Tropheryma | Tropheryma whipplei TW08/27 | Twhi_Aa | 637000330 | 218496 | 637381758 | No | TW725 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 1 | Yes | No | No | 637381345 | MEE | |||||||
99 | β | Bacteria | Actinobacteria | Actinobacteridae | Actinomycetales | Streptomycetaceae | Streptomyces | Streptomyces griseus subsp. griseus NBRC 13350 | Sgri_Ab | 641522653 | 455632 | 641698599 | - | - | No | SGR_4250 | cd04246 | cd00000cd4936 | 0 | 1 | 0 | 2 | Yes | No | No | 641696496 | MLE | |||||
99 | α | Bacteria | Actinobacteria | Rubrobacteridae | Rubrobacterales | Rubrobacteraceae | Rubrobacter | Rubrobacter xylanophilus DSM 9941 | Rxyl_Aa | 637000248 | 266117 | 638035880 | - | No | Rxyl_1090 | cd04243 | 1 | 0 | 0 | 2 | Yes | No | No | 638035881 | absent | |||||||
99 | β | Bacteria | Actinobacteria | Rubrobacteridae | Rubrobacterales | Rubrobacteraceae | Rubrobacter | Rubrobacter xylanophilus DSM 9941 | Rxyl_Ab | 637000248 | 266117 | 638034891 | - | No | Rxyl_0098 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 2 | Yes | No | No | 638035881 | VEH | ||||||
99 | β | Bacteria | Aquificae | Aquificae (class) | Aquificales | Aquificaceae | Aquifex | Aquifex aeolicus VF5 | Aaeo_Aa | 637000010 | 224324 | 637020168 | - | No | aq_1152 | cd04261 | cd04913/cd04936 | 1 | 0 | 0 | 1 | Yes | No | No | 637020645 | MEK | ||||||
99 | α | Bacteria | Chloroflexi | Chloroflexi (class) | Chloroflexales | Chloroflexaceae | Roseiflexus | Roseiflexus sp. RS-1 | ROSE-4a | 640427139 | 357808 | 640596670 | - | No | RoseRS_3079 | cd04244 | cd04921/cd04922 | 1 | 0 | 0 | 2 | Yes | No | No | 640595579/640596579 | absent | ||||||
99 | α | Bacteria | Chloroflexi | Chloroflexi (class) | Chloroflexales | Chloroflexaceae | Roseiflexus | Roseiflexus sp. RS-1 | ROSE-4b | 640427139 | 357808 | 640595637 | - | No | RoseRS_2031 | cd04243 | cd04921 | KFGA | 0 | 0 | 2 | Yes | No | No | 640595579/640596579 | absent | ||||||
99 | β | Bacteria | Deinococcus-Th | Deinococci | Thermales | Thermaceae | Thermus | Thermus thermophilus HB27 | Tthe_Aa | 637000322 | 262724 | 637498796 | Yes | TTC0166 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 2dt9 | 1 | Yes | No | No | 637498743 | MEM | ||||||
99 | β | Bacteria | Firmicutes | Clostridia | Clostridiales | unclassified | Symbiobacterium | Symbiobacterium thermophilum IAM 14863 | Sthe-17_Ab | 637000306 | 292459 | 637538207 | - | No | STH1686 | cd04261 | cd04913/cd04936 | 1 | 0 | 0 | 2 | Yes | No | No | 637539275 | VVA | ||||||
99 | β | Bacteria | Firmicutes | Clostridia | Clostridiales | Peptococcaceae | Carboxydothermus | Carboxydothermus hydrogenoformans Z-2901 | Chyd_Aa | 637000060 | 246194 | 637754649 | - | No | CHY_1909 | cd04261 | cd04913/cd04923 | 0 | 1 | 0 | 2 | Yes | No | No | 637754652 | LEK | ||||||
99 | β | Bacteria | Firmicutes | Clostridia | Clostridiales | Syntrophomonadaceae | Syntrophomonas | Syntrophomonas wolfei wolfei Goettingen | Swol_Aa | 637000316 | 335541 | 638138198 | - | No | Swol_1317 | cd04261 | cd04913/cd04936 | 1 | 0 | 0 | 1 | Yes | No | No | 638138200 | MEN | ||||||
99 | β | Bacteria | Firmicutes | Clostridia | Thermoanaerobacter | Thermoanaerobacteriace | Moorella | Moorella thermoacetica ATCC 39073 | Mthe-3_Aa | 637000167 | 264732 | 637829240 | - | No | Moth_1304 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 2 | Yes | No | No | 637829243 | MER | ||||||
99 | β | Bacteria | Planctomycetes | Planctomycetacia | Planctomycetales | Planctomycetaceae | Rhodopirellula | Rhodopirellula baltica SH 1 | Rbal_Aa | 637000236 | 243090 | 637438000 | - | No | RB8926 | cd04261 | cd04913/cd04936/cd04913/cd04936 | 1 | 0 | 0 | 1 | Yes | Yes | No | 637437770 | MIV | ||||||
99 | β | Bacteria | Proteobacteria | Alphaproteobacteria | Rickettsiales | SAR11 | Pelagibacter | Candidatus Pelagibacter ubique HTCC1062 | Pubi_Aa | 637000058 | 335992 | 637671386 | - | No | SAR11_0516 | cd04261 | cd04913/cd04936 | 1 | 0 | 0 | 1 | Yes | No | No | 637671897 | absent | ||||||
99 | β | Bacteria | Proteobacteria | Deltaproteobacteria | Myxococcales | Myxococcaceae | Myxococcus | Myxococcus xanthus DK 1622 | Mxan_Ab | 637000186 | 246197 | 638024825 | - | No | MXAN_3466 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 4 | Yes | No | No | MED | |||||||
99 | α | Bacteria | Proteobacteria | Deltaproteobacteria | Myxococcales | Myxococcaceae | Myxococcus | Myxococcus xanthus DK 1622 | Mxan_Ac | 637000186 | 246197 | 638023646 | - | Yes | MXAN_2278 | Ask/Hdh | cd04243 | cd04921/cd04922 | 1 | 0 | 0 | 4 | Yes | No | No | absent | ||||||
99 | α | Bacteria | Proteobacteria | Deltaproteobacteria | Myxococcales | Myxococcaceae | Myxococcus | Myxococcus xanthus DK 1622 | Mxan_Ad | 637000186 | 246197 | 638022362 | - | Yes | MXAN_0971 | Ask/Hdh | cd04243 | cd04921/cd04922 | 1 | 0 | 0 | 4 | Yes | No | No | absent | ||||||
99 | β | Bacteria | Proteobacteria | Deltaproteobacteria | Syntrophobacterale | Syntrophobacteraceae | Syntrophobacter | Syntrophobacter fumaroxidans MPOB | Sfum_Aa | 639633063 | 335543 | 639702939 | - | No | Sfum_2173 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 1 | Yes | No | No | 639701985 | MEK | ||||||
99 | β | Bacteria | Proteobacteria | Gammaproteobacteria-lower | Alteromonadales | Pseudoalteromonadaceae | Pseudoalteromona | Pseudoalteromonas haloplanktis TAC125 | Phal_Aa | 637000217 | 326442 | 637733416 | - | No | PSHAa0533 | cd04261 | cd04913/cd04936 | 1 | 0 | 0 | 4 | Yes | Yes | No | MPG | |||||||
99 | β | Bacteria | Proteobacteria | Gammaproteobacteria-lower | Alteromonadales | Psychromonadaceae | Psychromonas | Psychromonas ingrahamii 37 | Ping_Aa | 639633052 | 357804 | 639798495 | - | No | Ping_3379 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 2 | Yes | Yes | No | MES | |||||||
99 | β | Bacteria | Proteobacteria | Gammaproteobacteria-upper | Cardiobacteriales | Cardiobacteriaceae | Dichelobacter | Dichelobacter nodosus VCS1703A | Dnod_Aa | 640427112 | 246195 | 640524868 | - | - | No | DNO_0285 | cd04261 | cd04891/cd04923 | 0 | 1 | 0 | 1 | No | No | No | VEG | ||||||
99 | β | Bacteria | Proteobacteria | Gammaproteobacteria-upper | Legionellales | Coxiellaceae | Coxiella | Coxiella burnetii RSA 493 | Cbur_Aa | 637000086 | 227377 | 637162720 | - | No | CBU_1051 | cd04261 | cd04913/cd04936 | 1 | 0 | 0 | 1 | No | No | No | absent | |||||||
99 | β | Bacteria | Proteobacteria | Gammaproteobacteria-upper | Methylococcales | Methylococcaceae | Methylococcus | Methylococcus capsulatus Bath | Mcap_Aa | 637000166 | 243233 | 637169609 | - | No | MCA0390 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 1 | Yes | Yes | No | 637169810 | VEK | ||||||
99 | β | Bacteria | Proteobacteria | Gammaproteobacteria-upper | Oceanospirillales | Halomonadaceae | Chromohalobacter | Chromohalobacter salexigens DSM 3043 | Csal_Aa | 637000075 | 290398 | 637965794 | - | No | Csal_0626 | cd04261 | cd04913/cd04936 | 1 | 0 | 0 | 1 | Yes | Yes | No | 637968216 | MEE | ||||||
99 | β | Bacteria | Proteobacteria | Gammaproteobacteria-upper | Thiotrichales | Piscirickettsiaceae | Thiomicrospira | Thiomicrospira crunogena XCL-2 | Tcru_Aa | 637000325 | 317025 | 637786326 | - | No | Tcr_1589 | cd04261 | cd04913/cd04936 | 0 | 1 | 0 | 2 | Yes | Yes | No | 637785983 | MEK | ||||||
99 | β | Bacteria | Proteobacteria | Gammaproteobacteria | unclassified | unclassified | Carsonella | Candidatus Carsonella ruddii PV | Crud_Aa | 639633018 | 387662 | 639660685 | - | - | No | CRP_108 | cd04246 | cd04913/cd04923 | 1 | 0 | 0 | 1 | Yes | No | No | 639660701 | MER | |||||
99 | β | Bacteria | Proteobacteria | unclassified | unclassified | unclassified | Magnetococcus | Magnetococcus sp. MC-1 | MAGN-2a | 639633036 | 156889 | 639721714 | - | No | Mmc1_0966 | cd04261 | cd04913/cd04936 | 1 | 0 | 0 | 1 | Yes | Yes | No | 639722498 | MES |
Column "XXXX Motif": 1 for using XXXX motif at front.
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