» Table 3: Lateral Gene Transfer

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Info: Cohesion 'Group' 99 is comprised of orphan sequences.

Organism Dynamic Table Link Cohesion Group Near-donor lineage Ancient-donor lineage Co-transferred genes
Actinobacillus pleuropneumoniae L20 Aple_Aa 21 Bacteroidetes
Actinobacillus pleuropneumoniae L20 Aple_Ab 4 Sphingobacteriales hdh/thrB/thrC
Aeromonas hydrophila hydrophila ATCC 7966 Ahyd_Ab 21 Bacteroidetes
Aeromonas hydrophila hydrophila ATCC 7966 Ahyd_Ac 4 Sphingobacteriales hdh/thrB/thrC
Aeromonas salmonicida salmonicida A449 Asal_Ab 21 Bacteroidetes
Aeromonas salmonicida salmonicida A449 Asal_Ad 4 Sphingobacteriales hdh/thrB/thrC
Arabidopsis thaliana Columbia Atha_d 7 Sphingobacteriales hdh/thrB
Arabidopsis thaliana Columbia Atha_e 7 Sphingobacteriales hdh/thrB
Bdellovibrio bacteriovorus HD100 Bbac_Ab 21 Gammaproteobacteria-lower Bacteroidetes
Candidatus Blochmannia floridanus Bflo_a 4 Sphingobacteriales hdh/thrB/thrC
Buchnera aphidicola APS Baph_Aa 4 Sphingobacteriales hdh/thrB/thrC
Colwellia psychrerythraea 34H Cpsy_Aa 21 Bacteroidetes
Colwellia psychrerythraea 34H Cpsy_Ab 4 Sphingobacteriales hdh/thrB/thrC
Enterobacter sp. 638 ENTE-2a 21 Bacteroidetes
Enterobacter sp. 638 ENTE-2c 4 Sphingobacteriales hdh/thrB/thrC
Erwinia carotovora atroseptica SCRI1043 Patr_Aa 21 Bacteroidetes
Erwinia carotovora atroseptica SCRI1043 Patr_Ac 4 Sphingobacteriales hdh/thrB/thrC
Escherichia coli K12 Ecol_Aa 21 Bacteroidetes
Escherichia coli K12 Ecol_Ac 4 Sphingobacteriales hdh/thrB/thrC
Francisella tularensis novicida U112 Ftul_Aa 21 Gammaproteobacteria-lower Bacteroidetes
Francisella tularensis novicida U112 Ftul_Ab 7 Sphingobacteriales hdh/thrB/thrC
Haemophilus ducreyi 35000HP Hduc_Aa 21 Bacteroidetes
Haemophilus influenzae 86-028NP Hinf_Aa 4 Sphingobacteriales hdh/thrB/thrC
Haemophilus somnus 129PT Hsom_Aa 4 Sphingobacteriales hdh/thrB/thrC
Idiomarina loihiensis L2TR Iloi_Aa 21 Bacteroidetes lysA
Legionella pneumophila pneumophila Philadelphia Lpne_Aa 9 Sphingobacteriales
Mannheimia succiniciproducens MBEL55E Msuc_Aa 21 Bacteroidetes
Mannheimia succiniciproducens MBEL55E Msuc_Ab 4 Sphingobacteriales hdh/thrB/thrC
Maricaulis maris MCS10 Mmar_Ab 9 Sphingobacteriales lysA
Maricaulis maris MCS10 Mmar_Ac 52 Sphingobacteriales hdh/thrB/thrC
Methanopyrus kandleri AV19 Mkan_Aa 19 Desulfurococcales
Myococcus xanthis Mxan_Ac 99 Gammaproteobacteria-lower hdh
Myococcus xanthis Mxan_Ad 99 Flavobacteriaceae hdh
Oceanicaulis alexandrii HTCC2633 Oale_Ab 9 Sphingobacteriales lysA
Oceanicaulis alexandrii HTCC2633 Oale_Ac 52 Sphingobacteriales hdh/thrB/thrC
Pasteurella multocida multocida Pm70 Pmul_Aa 21 Bacteroidetes
Pasteurella multocida multocida Pm70 Pmul_Ab 4 Sphingobacteriales hdh/thrB/thrC
Photobacterium profundum SS9 Ppro_Bc 21 Bacteroidetes
Photobacterium profundum SS9 Ppro_Bd 4 Sphingobacteriales hdh/thrB/thrC
Photorhabdus luminescens laumondii TTO1 Plum_Aa 21 Bacteroidetes
Photorhabdus luminescens laumondii TTO1 Plum_Ac 4 Sphingobacteriales hdh/thrB/thrC
Pseudoalteromonas atlantica T6c Patl_Aa 21 Bacteroidetes
Pseudoalteromonas atlantica T6c Patl_Ab 4 Sphingobacteriales hdh/thrB/thrC
Pseudoalteromonas haloplanktis TAC125 Phal_Ab 21 Bacteroidetes
Pseudoalteromonas haloplanktis TAC125 Phal_Ad 4 Sphingobacteriales hdh/thrB/thrC
Psychromonas ingrahamii 37 Ping_Ab 4 Sphingobacteriales hdh/thrB/thrC
Salmonella enterica enterica sv Typhi Ty2 Sent_Na 21 Bacteroidetes
Salmonella enterica enterica sv Typhi Ty2 Sent_Nc 4 Sphingobacteriales hdh/thrB/thrC
Salmonella typhimurium LT2 Styp_Aa 21 Bacteroidetes
Salmonella typhimurium LT2 Styp_Ac 4 Sphingobacteriales hdh/thrB/thrC
Shewanella amazonensis SB2B Sama_Ab 21 Bacteroidetes
Shewanella amazonensis SB2B Sama_Ad 4 Sphingobacteriales hdh/thrB/thrC
Shewanella baltica OS155 Sbal_Ab 21 Bacteroidetes
Shewanella baltica OS155 Sbal_Ad 4 Sphingobacteriales hdh/thrB/thrC
Shewanella denitrificans OS217 Sden_Aa 21 Bacteroidetes
Shewanella denitrificans OS217 Sden_Ab 4 Sphingobacteriales hdh/thrB/thrC
Shewanella frigidimarina NCIMB 400 Sfri_Ab 21 Bacteroidetes
Shewanella frigidimarina NCIMB 400 Sfri_Ac 4 Sphingobacteriales hdh/thrB/thrC
Shewanella loihica PV-4 Sloi_Aa 21 Bacteroidetes
Shewanella loihica PV-4 Sloi_Ac 4 Sphingobacteriales hdh/thrB/thrC
Shewanella oneidensis MR-1 Sone_Ab 21 Bacteroidetes
Shewanella oneidensis MR-1 Sone_Ad 4 Sphingobacteriales hdh/thrB/thrC
Shewanella putrefaciens CN-32 Sput_Ab 21 Bacteroidetes
Shewanella putrefaciens CN-32 Sput_Ad 4 Sphingobacteriales hdh/thrB/thrC
Shewanella sp. ANA-3 SHEW-3b 21 Bacteroidetes
Shewanella sp. ANA-3 SHEW-3d 4 Sphingobacteriales hdh/thrB/thrC
Shigella boydii Sb227 Sdys_Aa 21 Bacteroidetes
Shigella boydii Sb227 Sdys_Ab 4 Sphingobacteriales hdh/thrB/thrC
Shigella dysenteriae Sd197 Sdys_Aa 21 Bacteroidetes
Shigella dysenteriae Sd197 Sdys_Ac 4 Sphingobacteriales hdh/thrB/thrC
Shigella flexneri 2a 2457T Sfle_Aa 21 Bacteroidetes
Shigella flexneri 2a 2457T Sfle_Ac 4 Sphingobacteriales hdh/thrB/thrC
Shigella sonnei Ss046 Sson_Aa 21 Bacteroidetes
Shigella sonnei Ss046 Sson_Ac 4 Sphingobacteriales hdh/thrB/thrC
Sodalis glossinidius morsitans Sglo_Aa 21 Bacteroidetes
Sodalis glossinidius morsitans Sglo_Ab 4 Sphingobacteriales hdh/thrB/thrC
Thermus thermophilus HB27 Tthe_Aa 99 ?
Vibrio cholerae O1 biovar eltor str. N16961 Vcho_Fb 21 Bacteroidetes
Vibrio cholerae O1 biovar eltor str. N16961 Vcho_Fd 4 Sphingobacteriales hdh/thrB/thrC
Vibrio fischeri ES114 Vfis_Ab 21 Bacteroidetes
Vibrio fischeri ES114 Vfis_Ae 4 Sphingobacteriales hdh/thrB/thrC
Vibrio parahaemolyticus RIMD 2210633 Vpar_Ab 21 Bacteroidetes
Vibrio parahaemolyticus RIMD 2210633 Vpar_Ae 4 Sphingobacteriales hdh/thrB/thrC
Vibrio vulnificus CMCP6 Vvul_Ab 4 Sphingobacteriales hdh/thrB/thrC
Vibrio vulnificus CMCP6 Vvul_Ac 21 Bacteroidetes
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis Wglo_Aa 4 Sphingobacteriales hdh/thrB/thrC
Xanthomonas axonopodis pv. citri 306 Xaxo_Aa 9 Sphingobacteriales lysA
Xanthomonas axonopodis pv. citri 306 Xaxo_Ab 7 Sphingobacteriales hdh/thrB/thrC
Xanthomonas campestris pv. campestris ATCC 33913 Xcam_Aa 9 Sphingobacteriales lysA
Xanthomonas campestris pv. campestris ATCC 33913 Xcam_Ab 7 Sphingobacteriales hdh/thrB/thrC
Xanthomonas oryzae pv. oryzae KACC10331 Xory_Aa 7 Sphingobacteriales hdh/thrB/thrC
Xanthomonas oryzae pv. oryzae KACC10331 Xory_Ab 9 Sphingobacteriales lysA
Xylella fastidiosa Temecula1 Xfas_Aa 7 Sphingobacteriales hdh/thrB/thrC
Xylella fastidiosa Temecula1 Xfas_Ab 9 Sphingobacteriales lysA
Yersinia enterocolitica enterocolitica 8081 Yent_Aa 4 Sphingobacteriales hdh/thrB/thrC
Yersinia pestis CO92 Ypes_Aa 21 Bacteroidetes
Yersinia pestis CO92 Ypes_Ab 4 Sphingobacteriales hdh/thrB/thrC
Yersinia pseudotuberculosis IP 32953 Ypse_Aa 21 Bacteroidetes
Yersinia pseudotuberculosis IP 32953 Ypse_Ab 4 Sphingobacteriales hdh/thrB/thrC


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