SOPs

SEED standard operating procedures

To generate data that is useful to the various communities involved in the process of annotation and use of annotations, we make available our standard operating procedures.

• Annotation
  • File:The48hrserver.pdf Annotating a genome with the 48-hour service (NMPDR|SOP005)
  • File:GO AND PFAM SOP.pdf Creation of GO-terms (NMPDR|SOP004)
• BRC
  • File:Brc upload sop.pdf Releasing GFF3 files(NMPDR|SOP006)

• Obsolete SOPs
  • Gene calling (NMPDR|SOP001)
  • Annotation of close strain sets(NMPDR|SOP002)
  • File:New genome sop.pdf Adding Genomes to the NMPDR (NMPDR|SOP003)