Difference between revisions of "SOPs"

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== SEED standard operating procedures ==
 
== SEED standard operating procedures ==
  
To generate data that is usefull to the various communities involved in the process of annotation and use of annotations, we make available out standard operating procedures.
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To generate data that is useful to the various communities involved in the process of annotation and use of annotations, we make available our standard operating procedures.
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* Gene calling
 
** Gene calling for close strain sets
 
** Gene calling for diverse prokaryotes
 
** Gene calling for Eukayotes
 
 
* Annotation
 
* Annotation
** Annotation of close strain sets
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** Annotation Codes (NMPDR|SOP010) [[Image:Annotation sop.pdf]]
** Annotation of diverse genomes.
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** Annotating a genome with the 48-hour service (NMPDR|SOP005) [[Image:The48hrserver.pdf]]
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** Creation of GO-terms (NMPDR|SOP004) [[Image:GO AND PFAM SOP.pdf|thumb|Description]]
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*BRC
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**Releasing GFF3 files(NMPDR|SOP006) [[Image:brc upload sop.pdf]]
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* Obsolete SOPs
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** [[GeneCalling|Gene calling (NMPDR|SOP001)]]
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** [[Annotation_of_close_strain_sets|Annotation of close strain sets(NMPDR|SOP002)]]
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** Adding Genomes to the NMPDR (NMPDR|SOP003) [[Image:New_genome_sop.pdf]]

Latest revision as of 15:27, 6 December 2006

SEED standard operating procedures

To generate data that is useful to the various communities involved in the process of annotation and use of annotations, we make available our standard operating procedures.