Difference between revisions of "SEED Viewer Manual/ShowSeqs"

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== Show Sequences ==
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== Display fasta sequences ==
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This page shows sequences of given features. Usually, you enter this page from a page where you have selected a number of sequences. You can download or display the sequences using the '''Download Sequences''' or '''Show Fasta''' buttons.
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The header of the fasta sequences is in the format ''>feature_id [Organism id] [annotation]''.
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You can choose between three options for the sequences:
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1) '''DNA Sequence'''
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Provides you with the DNA sequence in fasta format.
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2) '''DNA Sequence with flanking'''
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Also DNA sequence, but it adds a number of bases upstream and downstream to the feature. The sequence of the feature will then appear in upper-case letters, while the flanking sequences will be lower-case.
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3) '''Protein Sequence'''
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The protein sequence (translated DNA).
  
 
[[Image:ShowSeqs.png]]
 
[[Image:ShowSeqs.png]]

Latest revision as of 11:57, 1 December 2008

Display fasta sequences

This page shows sequences of given features. Usually, you enter this page from a page where you have selected a number of sequences. You can download or display the sequences using the Download Sequences or Show Fasta buttons.

The header of the fasta sequences is in the format >feature_id [Organism id] [annotation].

You can choose between three options for the sequences:

1) DNA Sequence

Provides you with the DNA sequence in fasta format.

2) DNA Sequence with flanking

Also DNA sequence, but it adds a number of bases upstream and downstream to the feature. The sequence of the feature will then appear in upper-case letters, while the flanking sequences will be lower-case.

3) Protein Sequence

The protein sequence (translated DNA).

ShowSeqs.png