Keyword Box

The NMPDR keyword search works like a typical search engine. You type in the appropriate words, and a list of genes will come back.

The keywords for a specified gene are as follows. The examples shown are for the gene fig|171101.1.peg.269, which is sulD for Streptococcus pneumoniae R6.

FIG gene identifier	171101.1.peg.269
The aliases	15902313, kegg|spd:SPD_0272, kegg|spr:spr0269, NP_357863.1, sp|P59657, spr0269, sulD, tr|Q04MF8, uni|P59657, uni|Q04MF8
All words in the functional role	Dihydroneopterin, aldolase 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine, pyrophosphokinase amino, hydroxy, hydroxymethyldihydropteridine
The genome ID	171101.1
All words in the taxonomy	bacteria, firmicutes, lactobacillales, streptococcaceae, streptococcus, pneumoniae, r6
The subsystem names and classifications	folate, biosynthesis, cofactors, vitamins, prosthetic, groups, pigments, folates, pterines
The EC number	2.7.6.3, 4.1.2.25
The subsystem role	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine, pyrophosphokinase, amino, hydroxy, hydroxymethylhydroperidine
Special Keywords	essential

Notes

• In the functional role, hyphenated words are stored in their full form (2-amino-4-hydroxy-6-hydroxymethyldihydropteridine) as well as broken up on the hyphen boundaries (amino- hydroxy hydroxymethyldihydropteridine).
• Keywords are case-insensitive
• Special keywords indicate attributes of the gene. The list of special keywords currently supported appears below.
  • virulence, which indicates the gene participates in the process of helping the organism to damage its host
  • essential, which indicates that the gene is essential to to the survival of the organism
  • iedb, which indicates that the gene is listed in the Immune Epitope Database