SEED Viewer Manual/ShowSeqs

Display fasta sequences

This page shows sequences of given features. Usually, you enter this page from a page where you have selected a number of sequences. You can download or display the sequences using the Download Sequences or Show Fasta buttons. The header of the fasta sequences is in the format >feature_id \[Organism id\] \[annotation\]. You can choose between three options for the sequences:

1) DNA Sequence

Provides you with the DNA sequence in fasta format.

2) DNA Sequence with flanking

Also DNA sequence, but it adds a number of bases upstream and downstream to the feature. The sequence of the feature will then appear in upper-case letters, while the flanking sequences will be lower-case.

3) Protein Sequence

The protein sequence (translated DNA).