SEED Viewer Manual

From TheSeed
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The SEED is a framework to support comparative analysis and annotation of genomes. The SEED Viewer allows you to explore the curated genomes that have been produced by a cooperative effort that includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, the University of Chicago and teams from a number of other institutions.

These pages will cover the usage of the different pages within the Seed Viewer.

Home

The home page of the seedviewer offers you several entry points to explore the data in the SEED.

Common components of a web page in the seedviewer are the following:

1) The menu

Hovering over the menu will show you submenus that are relevant for the page you are viewing. The categories Navigate and Help will always be present on each page. Other menu categories are added dependent on the context of the page. Click here to learn more about using the menu.

2) Find

The Find window allows you to search for keywords or ids. To learn more about the find window, click Find.

3) Login

4) Body of the Page


Home1.png

Subsystem Select

Subsystems

Functional Role

FigFams

Annotation

Evidence

Blast

Sequence

Browse Genome

Organism Select

Organism Overview

Kegg

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