Difference between revisions of "Home of the SEED"
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With the growing number of genomes becoming available, a software environment is needed to produce accurate and consistent annotations. | With the growing number of genomes becoming available, a software environment is needed to produce accurate and consistent annotations. | ||
| − | The SEED is that environment | + | The SEED is that environment. We provide a public [http://explorer.theseed.org/FIG/index.cgi SEED-Viewer] that allows read-only access to the latest data and annotations. For users interested in editing and learning how to use the system, we also provide a [http://theseed.uchicago.edu/FIG/index.cgi Trial-SEED]. |
| − | For users interested in editing and learning how to use the system, we also provide a [http://theseed.uchicago.edu/FIG/index.cgi Trial-SEED]. | ||
| − | + | As described in our [[Annotating_1000_Genomes|manifesto] the [[Glossary#annotation|annotation]] is not performed on a gene by gene basis per genome, but rather by [[Glossary#subsystem|subsystem]] by an expert curator across many genomes at a time. | |
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* We provide a list [[Glossary]] of terms used. | * We provide a list [[Glossary]] of terms used. | ||
* When using the SEED, please cite: Overbeek et al., [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16214803&query_hl=2&itool=pubmed_docsum|Nucleic Acids Res 33(17)], 2005 | * When using the SEED, please cite: Overbeek et al., [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16214803&query_hl=2&itool=pubmed_docsum|Nucleic Acids Res 33(17)], 2005 | ||
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* Our approaches to annotation, gene calling etc are outlined in a series of [[SOPs|Standard Operating Procedures]]. | * Our approaches to annotation, gene calling etc are outlined in a series of [[SOPs|Standard Operating Procedures]]. | ||
Revision as of 12:09, 11 August 2006
With the growing number of genomes becoming available, a software environment is needed to produce accurate and consistent annotations.
The SEED is that environment. We provide a public SEED-Viewer that allows read-only access to the latest data and annotations. For users interested in editing and learning how to use the system, we also provide a Trial-SEED.
As described in our [[Annotating_1000_Genomes|manifesto] the annotation is not performed on a gene by gene basis per genome, but rather by subsystem by an expert curator across many genomes at a time.
- You can download software and data from our DownloadPage page.
- We provide a list Glossary of terms used.
- When using the SEED, please cite: Overbeek et al., Acids Res 33(17), 2005
- Our approaches to annotation, gene calling etc are outlined in a series of Standard Operating Procedures.