SeedViewer Subsystem

SEED Viewer Subsystem Page

Overview

On the top, right of the page a box contains the statistics for this subsystem including the

number of functional roles, total number of genomes, and the number of genomes where this subsystem

is present,not present or is still a work in progress.

The username of annotator who is responsible for the subsystem is listed.

Diagram

The noninteractive diagram illustrates the connectivity of the roles, alternate pathways, intermediate compounds and cofactors.

The functional role abbreviations in the boxes reference the roles in the table below. Currently diagrams are not present for every subsystem.

Functional Roles Table

This list all the functional roles that define the subsystem. Each functional role is linked to a Functional Role page in the SEED Viewer.

When present the entry in the EC column links to KEGG.

In the Ontologies column, the buttons 'Rc' and 'GO' are shaded green if a KEGG reaction

or GO ontology term respectively is associated with this functional role. The 'Rc' button is linked to back to the Functional Role page

which displays the KEGG reaction id. The 'GO' button is linked to an entry in AmiGO.

Functional roles that share the same abbreviation in the Group Alias column have been grouped together by the annotator, usually because

they share a similar function but are found in different organisms. These groupings can be utilized in visualizing the Populated Subsystem table.

If the annotator of the subsytem has defined subsets of functional roles, the 'Highlight subsets' menu will be present above the table. Use this menu

to highlight defined internal pathways of the subsystem in within the table.

Populated Subsystem

Notes