Difference between revisions of "SEED Viewer Manual/ShowSeqs"
Jump to navigation
Jump to search
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
| − | == | + | == Display fasta sequences == |
| + | |||
| + | This page shows sequences of given features. Usually, you enter this page from a page where you have selected a number of sequences. You can download or display the sequences using the '''Download Sequences''' or '''Show Fasta''' buttons. | ||
| + | |||
| + | The header of the fasta sequences is in the format ''>feature_id [Organism id] [annotation]''. | ||
| + | |||
| + | You can choose between three options for the sequences: | ||
| + | |||
| + | 1) '''DNA Sequence''' | ||
| + | |||
| + | Provides you with the DNA sequence in fasta format. | ||
| + | |||
| + | 2) '''DNA Sequence with flanking''' | ||
| + | |||
| + | Also DNA sequence, but it adds a number of bases upstream and downstream to the feature. The sequence of the feature will then appear in upper-case letters, while the flanking sequences will be lower-case. | ||
| + | |||
| + | 3) '''Protein Sequence''' | ||
| + | |||
| + | The protein sequence (translated DNA). | ||
[[Image:ShowSeqs.png]] | [[Image:ShowSeqs.png]] | ||
Latest revision as of 05:57, 1 December 2008
Display fasta sequences
This page shows sequences of given features. Usually, you enter this page from a page where you have selected a number of sequences. You can download or display the sequences using the Download Sequences or Show Fasta buttons.
The header of the fasta sequences is in the format >feature_id [Organism id] [annotation].
You can choose between three options for the sequences:
1) DNA Sequence
Provides you with the DNA sequence in fasta format.
2) DNA Sequence with flanking
Also DNA sequence, but it adds a number of bases upstream and downstream to the feature. The sequence of the feature will then appear in upper-case letters, while the flanking sequences will be lower-case.
3) Protein Sequence
The protein sequence (translated DNA).
