Difference between revisions of "SOPs"
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| Line 5: | Line 5: | ||
* Annotation | * Annotation | ||
| − | ** | + | ** Annotating a genome with the 48-hour service (NMPDR|SOP005) [[Image:The48hrserver.pdf]] |
| − | ** [[Image:GO AND PFAM SOP.pdf|thumb|Description]] | + | ** Creation of GO-terms (NMPDR|SOP004) [[Image:GO AND PFAM SOP.pdf|thumb|Description]] |
*BRC | *BRC | ||
| − | **[[Image:brc upload sop.pdf]] | + | **Releasing GFF3 files(NMPDR|SOP006) [[Image:brc upload sop.pdf]] |
| Line 14: | Line 14: | ||
** [[GeneCalling|Gene calling (NMPDR|SOP001)]] | ** [[GeneCalling|Gene calling (NMPDR|SOP001)]] | ||
** [[Annotation_of_close_strain_sets|Annotation of close strain sets(NMPDR|SOP002)]] | ** [[Annotation_of_close_strain_sets|Annotation of close strain sets(NMPDR|SOP002)]] | ||
| − | ** | + | ** Adding Genomes to the NMPDR (NMPDR|SOP003) [[Image:New_genome_sop.pdf]] |
Revision as of 10:10, 6 December 2006
SEED standard operating procedures
To generate data that is useful to the various communities involved in the process of annotation and use of annotations, we make available our standard operating procedures.
- Annotation
- Annotating a genome with the 48-hour service (NMPDR|SOP005) File:The48hrserver.pdf
- Creation of GO-terms (NMPDR|SOP004) File:GO AND PFAM SOP.pdf
- BRC
- Releasing GFF3 files(NMPDR|SOP006) File:Brc upload sop.pdf
- Obsolete SOPs
- Gene calling (NMPDR|SOP001)
- Annotation of close strain sets(NMPDR|SOP002)
- Adding Genomes to the NMPDR (NMPDR|SOP003) File:New genome sop.pdf