Difference between revisions of "SEED Viewer Manual/Subsystems"
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A [[Glossary#Subsystem|subsystem]] is a collection of [[Glossary#Functional role|functional roles]] that are associated to each other in a system. Such a system can be a metabolic pathway, a component if a cell like a secretion system and others. | A [[Glossary#Subsystem|subsystem]] is a collection of [[Glossary#Functional role|functional roles]] that are associated to each other in a system. Such a system can be a metabolic pathway, a component if a cell like a secretion system and others. | ||
| − | The subsystem page in the SeedViewer is divided into different parts via a [[WebComponent/Tabview|TabView]]. The TabView can consist of 3-5 tabs. The first tab shows a '''Diagram''' of the subsystem, the second tab displays a [[WebComponents/Table|table]] with the '''Functional Roles''' present in the subsystem. The '''Spreadsheet''' showing relating the functional roles in the subsystem to features in genomes can be found in the third tab. | + | The subsystem page in the SeedViewer is divided into different parts via a [[WebComponent/Tabview|TabView]]. The TabView can consist of 3-5 tabs. The first tab shows a '''Diagram''' of the subsystem, the second tab displays a [[WebComponents/Table|table]] with the '''Functional Roles''' present in the subsystem. The '''Spreadsheet''' showing relating the functional roles in the subsystem to features in genomes can be found in the third tab. The fourth and fifth tab show a description and additional notes to a subsystem. They only appear if a subsystem has a description / notes. |
=== Diagram === | === Diagram === | ||
| + | |||
| + | The subsystem diagram shows the connections between the functional roles in a subsystem. The boxes represent the functional roles via their abbreviations. The circles are connecting intermediates, that are described in the table which is part of the diagram. | ||
[[Image:SubsystemDiagram.png]] | [[Image:SubsystemDiagram.png]] | ||
Revision as of 10:11, 25 November 2008
Subsystems
A subsystem is a collection of functional roles that are associated to each other in a system. Such a system can be a metabolic pathway, a component if a cell like a secretion system and others.
The subsystem page in the SeedViewer is divided into different parts via a TabView. The TabView can consist of 3-5 tabs. The first tab shows a Diagram of the subsystem, the second tab displays a table with the Functional Roles present in the subsystem. The Spreadsheet showing relating the functional roles in the subsystem to features in genomes can be found in the third tab. The fourth and fifth tab show a description and additional notes to a subsystem. They only appear if a subsystem has a description / notes.
Diagram
The subsystem diagram shows the connections between the functional roles in a subsystem. The boxes represent the functional roles via their abbreviations. The circles are connecting intermediates, that are described in the table which is part of the diagram.
Functional Roles
Spreadsheet
