SEED Viewer Manual/OrganismPage

Organism Page

Menu and General Information

Two menus are added to the menu bar when visiting an organism page. These are organism specific menus and described in the Menu Overview.

The general information about an organism include name, taxonomy id (linked to NCBI), the domain (Bacteria, Archeae or Eukaryota) as well as some information about the genome (contigs, subsystems, genes). The icon next to the taxonomy id leads to a Wikipedia page for that organism (the icon only shows up if there exists a Wikipedia page).

If you click on click for full list, you will find more specific information about the organism.

Browse, Compare and Download

The little TabView next to the general information offers links to browse, compare and download the organism. These function are also available using the Organism menu.

Browse

Clicking the here link will lead to the [[SEED_Viewer_Manual/GenomeBrowser|Genome Browser] for the selected organism. It lets you browse the features of your organism.

Different kinds of comparisons of your selected organism to other organisms are available here (the function-based Compare Metabolic Reconstruction will enable you to see the metabolic reconstruction of your selected organism against that of another one. The sequence-based Multi Genome Compare shows a table and a graphics comparing a selected set of organisms projected against your chosen one (BLAST-based).

Compare

Download