Difference between revisions of "SEED Viewer Manual/HomologClusters"
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| + | == Homolog cluster == | ||
| + | |||
| + | # returns the homolog cluster table, where 'homology' is inferred by similarity score. | ||
| + | # For a given organism, only pegs which are in clusters are considered, and only | ||
| + | # a single peg (the one with the best sim score) is reported. | ||
| + | |||
| + | evalue: 1.0e-10 | ||
| + | |||
| + | maximal 50 homolog features | ||
| + | |||
Genes who's relative position is conserved in at least four other species are functionally coupled | Genes who's relative position is conserved in at least four other species are functionally coupled | ||
Revision as of 09:24, 24 November 2008
Homolog cluster
- returns the homolog cluster table, where 'homology' is inferred by similarity score.
- For a given organism, only pegs which are in clusters are considered, and only
- a single peg (the one with the best sim score) is reported.
evalue: 1.0e-10
maximal 50 homolog features
Genes who's relative position is conserved in at least four other species are functionally coupled