Difference between revisions of "SEED Viewer Manual/GenomeBrowser"
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== Genome Browser == | == Genome Browser == | ||
| − | The Genome Browser enables you to view the features of a genome in their genomic context. The page is divided into three parts, a [[WebComponents/Tabview|TabView]], the Six Frame View, and a [[WebComponents/Table|table]] showing all features of an organism. | + | The Genome Browser enables you to view the features of a genome in their genomic context. The page is divided into three parts, a Control [[WebComponents/Tabview|TabView]], the Six Frame View, and a [[WebComponents/Table|table]] showing all features of an organism. |
| − | === The | + | === The Six Frame View === |
The six frame view represents the six reading frames for proteins (-3, -2, -1, 1, 2, 3). Blue arrows are printed representing protein features. Their direction depicts the strand of the protein (- or +). | The six frame view represents the six reading frames for proteins (-3, -2, -1, 1, 2, 3). Blue arrows are printed representing protein features. Their direction depicts the strand of the protein (- or +). | ||
As RNA features (tRNAs, rRNAs, or other genomic features like binding sites) have no reading frames, they can be found in the middle line of the image, represented by little blue boxes. | As RNA features (tRNAs, rRNAs, or other genomic features like binding sites) have no reading frames, they can be found in the middle line of the image, represented by little blue boxes. | ||
| + | |||
| + | Hovering over a feature will show a tooltip containing information about the feature, including the name, the position in the genome, the [[Glossary#Functional_role|functional role]] and the [[Glossary#Subsystem|subsystem(s)] it's in. | ||
[[Image:GenomeBrowser6fw.png]] | [[Image:GenomeBrowser6fw.png]] | ||
| + | |||
| + | === The Control TabView === | ||
[[Image:GenomeBrowserLoc.png]] | [[Image:GenomeBrowserLoc.png]] | ||
[[Image:GenomeBrowserFeat.png]] | [[Image:GenomeBrowserFeat.png]] | ||
Revision as of 04:44, 21 November 2008
Genome Browser
The Genome Browser enables you to view the features of a genome in their genomic context. The page is divided into three parts, a Control TabView, the Six Frame View, and a table showing all features of an organism.
The Six Frame View
The six frame view represents the six reading frames for proteins (-3, -2, -1, 1, 2, 3). Blue arrows are printed representing protein features. Their direction depicts the strand of the protein (- or +).
As RNA features (tRNAs, rRNAs, or other genomic features like binding sites) have no reading frames, they can be found in the middle line of the image, represented by little blue boxes.
Hovering over a feature will show a tooltip containing information about the feature, including the name, the position in the genome, the functional role and the [[Glossary#Subsystem|subsystem(s)] it's in.
The Control TabView
