Difference between revisions of "SEED Viewer Manual"
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These pages will cover the usage of the different pages within the Seed Viewer. | These pages will cover the usage of the different pages within the Seed Viewer. | ||
| − | + | == Home == | |
The home page of the seedviewer offers you several entry points to explore the data in the [[Home_of_the_SEED|SEED]]. | The home page of the seedviewer offers you several entry points to explore the data in the [[Home_of_the_SEED|SEED]]. | ||
| − | Common components of a web page in the seedviewer are the following: | + | Common components of a web page in the seedviewer are the following. The image below depicts the locations of the components: |
| − | (1) [[SEED_Viewer_Manual/Menu|The menu]] | + | === (1) [[SEED_Viewer_Manual/Menu|The menu]] === |
Hovering over the menu will show you submenus that are relevant for the page you are viewing. The categories '''Navigate''' and '''Help''' will always be present on each page. Other menu categories are added dependent on the context of the page. Click [[SEED_Viewer_Manual/Menu|here]] to learn more about using the menu. | Hovering over the menu will show you submenus that are relevant for the page you are viewing. The categories '''Navigate''' and '''Help''' will always be present on each page. Other menu categories are added dependent on the context of the page. Click [[SEED_Viewer_Manual/Menu|here]] to learn more about using the menu. | ||
| − | (2) [[SEED_Viewer_Manual/Find|Find Window]] | + | === (2) [[SEED_Viewer_Manual/Find|Find Window]] === |
The Find window allows you to search for keywords or ids. To learn more about the find window, click [[SEED_Viewer_Manual/Find|here]]. | The Find window allows you to search for keywords or ids. To learn more about the find window, click [[SEED_Viewer_Manual/Find|here]]. | ||
| − | (3) [[WebComponents/Login|Login Box]] | + | === (3) [[WebComponents/Login|Login Box]] === |
Some actions may require a user to get a user account and log in. This is necessary for viewing private organisms a user has uploaded to the [[RAST_Tutorial|RAST]]. You can create a login by clicking on '''Register''' in the '''Help''' menu. To learn more about user management click [[SEED_Viewer_Manual/UserManagement|here]]. | Some actions may require a user to get a user account and log in. This is necessary for viewing private organisms a user has uploaded to the [[RAST_Tutorial|RAST]]. You can create a login by clicking on '''Register''' in the '''Help''' menu. To learn more about user management click [[SEED_Viewer_Manual/UserManagement|here]]. | ||
| − | (4) Body of the Page | + | === (4) Body of the Page === |
The home page allows you to specifically search the SEED data using five categories. They are presented in a [[WebComponents/Tabview|Tabview]] at the bottom of the Home page: | The home page allows you to specifically search the SEED data using five categories. They are presented in a [[WebComponents/Tabview|Tabview]] at the bottom of the Home page: | ||
| − | a) Organisms | + | '''a) Organisms''' |
Select an organism of interest in the [[SEED_Viewer_Manual/Organism Selects]] and press the button '''select'''. This will lead to the [[SEED_Viewer_Manual/OrganismPage|Organism Page]] of that organism. | Select an organism of interest in the [[SEED_Viewer_Manual/Organism Selects]] and press the button '''select'''. This will lead to the [[SEED_Viewer_Manual/OrganismPage|Organism Page]] of that organism. | ||
[[Image:Home1.png]] | [[Image:Home1.png]] | ||
Revision as of 06:34, 18 November 2008
The SEED is a framework to support comparative analysis and annotation of genomes. The SEED Viewer allows you to explore the curated genomes that have been produced by a cooperative effort that includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, the University of Chicago and teams from a number of other institutions.
These pages will cover the usage of the different pages within the Seed Viewer.
Home
The home page of the seedviewer offers you several entry points to explore the data in the SEED.
Common components of a web page in the seedviewer are the following. The image below depicts the locations of the components:
Hovering over the menu will show you submenus that are relevant for the page you are viewing. The categories Navigate and Help will always be present on each page. Other menu categories are added dependent on the context of the page. Click here to learn more about using the menu.
(2) Find Window
The Find window allows you to search for keywords or ids. To learn more about the find window, click here.
(3) Login Box
Some actions may require a user to get a user account and log in. This is necessary for viewing private organisms a user has uploaded to the RAST. You can create a login by clicking on Register in the Help menu. To learn more about user management click here.
(4) Body of the Page
The home page allows you to specifically search the SEED data using five categories. They are presented in a Tabview at the bottom of the Home page:
a) Organisms
Select an organism of interest in the SEED_Viewer_Manual/Organism Selects and press the button select. This will lead to the Organism Page of that organism.
