Difference between revisions of "Home of the SEED"

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The SEED is that environment, we provide a public [http://explorer.theseed.org/FIG/index.cgi  SEED-Viewer]  that allows read-only access to  the latest data and annotations.
 
The SEED is that environment, we provide a public [http://explorer.theseed.org/FIG/index.cgi  SEED-Viewer]  that allows read-only access to  the latest data and annotations.
For users interested in editing and learning how to use the system, we also provide a [http://theseed.uchicago.edu/FIG/index.cgi public SEED].
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For users interested in editing and learning how to use the system, we also provide a [http://theseed.uchicago.edu/FIG/index.cgi Trial-SEED].
  
 
The [[Glossary#annotation|annotation]] is performed not on a gene by gene basis per genome, but rather by [[Glossary#subsystem|subsystem]] by an expert curator across many genomes at a time.  
 
The [[Glossary#annotation|annotation]] is performed not on a gene by gene basis per genome, but rather by [[Glossary#subsystem|subsystem]] by an expert curator across many genomes at a time.  

Revision as of 12:42, 11 August 2006

Home of the SEED

With the growing number of genomes becoming available, a software environment is needed to produce accurate and consistent annotations.

The SEED is that environment, we provide a public SEED-Viewer that allows read-only access to the latest data and annotations. For users interested in editing and learning how to use the system, we also provide a Trial-SEED.

The annotation is performed not on a gene by gene basis per genome, but rather by subsystem by an expert curator across many genomes at a time.



  • You can download software and data from our DownloadPage page.
  • We provide a list Glossary of terms used.
  • When using the SEED, please cite: Overbeek et al., Acids Res 33(17), 2005
  • Ross Overbeek laid out the strategy for the annotation of the first 1000 genomes.
  • Our approaches to annotation, gene calling etc are outlined in a series of Standard Operating Procedures.