https:/// /w/index.php?action=history&feed=atom&title=SeedViewer_Search 2026-05-13T09:03:28Z Revision history for this page on the wiki MediaWiki 1.35.6 /w/index.php?title=SeedViewer_Search&diff=1550&oldid=prev 2006-11-03T20:44:31Z

<p></p> <p><b>New page</b></p><div>SEED Viewer Annotation Page<br /> <br /> Overview<br /> <br /> :This page offers access to the data relating to a feature. By default the Overview version of the page &lt;br&gt;<br /> :is initially displayed providing the feature's function assignment, source organism, the role it performs&lt;br&gt;<br /> :in a subsystem, and a graphic displaying it's genomic context.<br /> <br /> :In the graphic each line represents a different genome. The genome of the feature that is the subject of this page&lt;br&gt;<br /> :is on the first line with the subject feature in red and centered in a 16kb window. Features on the same line that have&lt;br&gt;<br /> :a gray shadow are functionally coupled to the subject feature. Features in different genome that share the same color or &lt;br&gt;<br /> :number are similar. Clicking 'Diverse Genomes' will change the genomes in the graphic to a set that is more phylogentically&lt;br&gt;<br /> :distant to the subject feature's genome.<br /> <br /> Sequence Data<br /> <br /> :From the green bar at the top of page, selecting the 'This Protein' menu will give the user the choice of viewing the&lt;br&gt;<br /> this feature's DNA sequence, DNA with flanking sequence or amino acid sequence. <br /> <br /> Tools<br /> <br /> :From the green bar at the top of the page, selecting the 'Tools' menu will give the user the choice of the following tools&lt;br&gt;<br /> :to analyze this feature:&lt;br&gt;<br /> <br /> ::TMpred<br /> :TMHMM<br /> :Gram negative PSORT<br /> :Gram negative SignalP<br /> :Gram positive PSORT<br /> :Gram positive SignalP<br /> :LipoP<br /> :InterProScan<br /> :Radar<br /> :PPSearch<br /> :Gram negative CELLO<br /> :Gram positive CELLO<br /> :ProDom<br /> <br /> Literature</div>

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