SeedViewer Home - Revision history

Mkubal at 20:09, 7 November 2006

2006-11-07T20:09:34Z

2006-11-07T20:08:31Z

2006-11-07T20:08:11Z

2006-11-07T19:37:16Z

2006-11-07T19:35:18Z

2006-11-02T20:06:50Z

2006-11-02T19:59:42Z

2006-11-02T19:58:44Z

2006-11-02T19:37:21Z

2006-11-02T19:36:37Z

@@ Line 3: / Line 3: @@
 The SEED contains archeal, bacterial, eukaryal, and viral genomes, as well as environmental samples.<br>
 A box on the top right of the home page provides a current total and complete count of each type.<br>
-Click on archael, bacterial. eukaryal, or viral to display a table listing the genomes in this set.<br>
+Click on archael, bacterial, eukaryal, or viral to display a table listing the genomes in this set.<br>

@@ Line 2: / Line 2: @@
 The SEED contains archeal, bacterial, eukaryal, and viral genomes, as well as environmental samples.<br>
-A box on the top right of the home page provides a current total and complete count of each type. <>br>
+A box on the top right of the home page provides a current total and complete count of each type.<br>
 Click on archael, bacterial. eukaryal, or viral to display a table listing the genomes in this set.<br>

@@ Line 2: / Line 2: @@
 The SEED contains archeal, bacterial, eukaryal, and viral genomes, as well as environmental samples.<br>
-A box on the top right of the home page provides a current total and complete count of each type.
+A box on the top right of the home page provides a current total and complete count of each type. <>br>
 ===Searching===

@@ Line 24: / Line 24: @@
 :clicking on a functional role will take you to a Functional Role page in the SEED Viewer,
 :clicking on a subsystem will take you to a Subsystem page in the SEED Viewer and
-:clicking on a PEG ID will take you an Annotation page in the SEED Viewer.
+:clicking on a feature ID will take you an Annotation page in the SEED Viewer.
 Blast Search<br>

@@ Line 13: / Line 13: @@
 :This is the default search option. Enter a key word or phrase in the text box and click the 'Text Search' button to the right of the text box.<br>
 :The search will treat the entered text as a regular expression and match strings and substrings found in functional roles, subsystems and features.
-:The results of the search will be displayed in up to 3 tables, a Functional Role table, Subsystem table and Features table.<br>
+:The results of the search will be displayed in up to 4 tables, a Functional Role table, Subsystem table,Features table and Organisms table.<br>
 :The number of hits associated with a functional role will appear above the Functional Role table. <br>
 :The number of features returned is limited to 100. <br>

@@ Line 19: / Line 19: @@
 :The columns in all tables can be alphanumerically sorted and reverse sorted by clicking on the respective triangle in a column header.<br>
 :If you check the 'quick search' option, the results will be limited to functionals role in a subsystem.
 Blast Search<br>

@@ Line 7: / Line 7: @@
 The SEED Viewer's home page provides 4 different perspectives on searching to help you effciently access the data in the SEED.<br>
-By clicking on 'Text Search','BLAST Search', 'Subsystems' or 'Organisms' you can change your search perspective.<br>
+By clicking on 'Text Search','BLAST Search', 'Subsystems' or 'Organisms' you can change the search perspective.<br>
 Notice that the text on button to the right of the text entry box will change after clicking on one of these perspectives.

@@ Line 12: / Line 12: @@
 Text Search<br>
 :This is the default search option. Enter a key word or phrase in the text box and click the 'Text Search' button to the right of the text box.<br>
-:This search cover features, functional roles and subsystems.
+:The search will treat the entered text as a regular expression and match strings and substrings found in functional roles, subsystems and features.
-:If you check the 'quick search' option, the results will be limited to features associated with a functional role in a subsystem.
+:The results of the search will be displayed in up to 3 tables, a Functional Role table, Subsystem table and Features table.<br>
-:The results of the search will be displayed in 2 tables, a Functional Role table and Subsystem table. The number of hits associated <br>
+:The number of hits associated with a functional role will appear above the Functional Role table. <br>
-:with a functional role will appear above the Functional Role table. To browse the results quickly use the next >> and last >> links.
+:The number of features returned is limited to 100. <br>
-:The columns in both tables can be alphanumerically sorted and reverse sorted by clicking on the respective triangle in the column header.<br>
+:To browse the results quickly use the next >> and last >> links.
 Blast Search<br>

← Older revision		Revision as of 19:36, 2 November 2006
Line 1:		Line 1:
		+	===Counts of Genomes in the SEED===
		+
		+	The SEED contains archeal, bacterial, eukaryal, and viral genomes, as well as environmental samples.<br>
		+	A box on the top right of the page provides a current total and complete count of each type.
		+
		+	===Searching===
		+
	The SEED Viewer's home page provides 4 different perspectives on searching to help you effciently access the data in the SEED.<br>		The SEED Viewer's home page provides 4 different perspectives on searching to help you effciently access the data in the SEED.<br>
	By clicking on 'Text Search','BLAST Search', 'Subsystems' or 'Organisms' you can change your search perspective.<br>		By clicking on 'Text Search','BLAST Search', 'Subsystems' or 'Organisms' you can change your search perspective.<br>