https:/// /w/index.php?action=history&feed=atom&title=SEED_Viewer_Manual%2FFIGfamsRelease 2026-05-13T06:49:12Z Revision history for this page on the wiki MediaWiki 1.35.6 /w/index.php?title=SEED_Viewer_Manual/FIGfamsRelease&diff=2349&oldid=prev 2008-12-04T10:44:36Z

<p><span dir="auto"><span class="autocomment">FIGfams Release</span></span></p> <table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 10:44, 4 December 2008</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l9" >Line 9:</td> <td colspan="2" class="diff-lineno">Line 9:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Subsystem Coverage ===</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Subsystem Coverage ===</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>The left bar in the graphics on this tab shows you the '''Subsystem Coverage''' of the FIGfams, meaning what percentage of the FIGfams is covered by subsystems. For these, you see a '''Category Distribution''' in the piechart in the middle. The tree right to the piechart lets you browse the categories shown in the piechart. For additional information how the use the graphics, see a similar graphic on the [[SEED_Viewer_Manual/OrganismPage|OrganismPage]].</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>The left bar in the graphics on this tab shows you the '''Subsystem Coverage''' of the FIGfams, meaning what percentage of the FIGfams is covered by subsystems. For these, you see a '''Category Distribution''' in the piechart in the middle. The tree right to the piechart lets you browse the categories shown in the piechart. For additional information how the use the graphics, see a similar graphic on the [[SEED_Viewer_Manual/OrganismPage<ins class="diffchange diffchange-inline">#Subsystem Information</ins>|OrganismPage]].</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Quality Control ===</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=== Quality Control ===</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The third tab explains how Quality Control is made for the FIGfams using a small set of genomes. These are annotated using the FIGfams, and the annotations are compared against the current annotations of the genomes.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The third tab explains how Quality Control is made for the FIGfams using a small set of genomes. These are annotated using the FIGfams, and the annotations are compared against the current annotations of the genomes.</div></td></tr> </table>

DanielaBartels /w/index.php?title=SEED_Viewer_Manual/FIGfamsRelease&diff=2347&oldid=prev 2008-12-04T10:42:24Z

<p></p> <p><b>New page</b></p><div>== FIGfams Release ==<br /> <br /> Here you can find some statistics about FIGfams presented in a [[WebComponents/Tabview|TabView]]. The different tabs show you information about the '''Size Distribution''', the '''Subsystem Coverage''' and '''Quality Control''' of the FIGfams.<br /> <br /> === Size Distribution ===<br /> <br /> This tab shows a graphic displaying the FIGfam Size against the FIGfam Quantity, for all releases of the FIGfams. For the latest release, you get a little table that tells you about the '''Version''', the '''Date''' the release was done, the number of FIGfams ('''FIGfams Quantity''') and the total number of sequences in FIGfams ('''Total Sequences''').<br /> <br /> === Subsystem Coverage ===<br /> <br /> The left bar in the graphics on this tab shows you the '''Subsystem Coverage''' of the FIGfams, meaning what percentage of the FIGfams is covered by subsystems. For these, you see a '''Category Distribution''' in the piechart in the middle. The tree right to the piechart lets you browse the categories shown in the piechart. For additional information how the use the graphics, see a similar graphic on the [[SEED_Viewer_Manual/OrganismPage|OrganismPage]].<br /> <br /> === Quality Control ===<br /> <br /> The third tab explains how Quality Control is made for the FIGfams using a small set of genomes. These are annotated using the FIGfams, and the annotations are compared against the current annotations of the genomes.</div>

DanielaBartels