NMPDR Search - Revision history

BruceParrello: Sorted the list of search types into alphabetical order

2007-07-26T17:51:49Z

Sorted the list of search types into alphabetical order

BruceParrello at 16:53, 26 July 2007

2007-07-26T16:53:06Z

BruceParrello: Trying to fix the stupid image

2007-07-25T21:25:53Z

Trying to fix the stupid image

BruceParrello at 21:35, 23 July 2007

2007-07-23T21:35:01Z

BruceParrello: Added image and text about the hint buttons

2007-07-23T21:31:34Z

Added image and text about the hint buttons

BruceParrello: An overview of the NMPDR search facility

2007-07-23T20:48:47Z

An overview of the NMPDR search facility

BruceParrello: An overview of the NMPDR search facility

2007-07-23T20:48:25Z

An overview of the NMPDR search facility

BruceParrello: Overview of the NMPDR Search Facility

2007-07-23T20:43:05Z

Overview of the NMPDR Search Facility

New page

The NMPDR search facility provides many different ways to look for genes, genomes, or sequences in the NMPDR database. The following searches are currently supported.

{|
| '''[[OpSearch]]''' || Display genes of a single genome organized into operons.
|-
| '''[[WordSearch]]''' || Display genes that match certain keywords.
|-
| '''[[FidSearch]]''' || Display genes from one or more genomes filtered by subsystem or keywords.
|-
| '''[[SigGenes]]''' || Display genes that are common to a set of genomes, or that differentiate between two sets of genomes.
|-
| '''[[ToolSearch]]''' || Search for genes or DNA using BLAST or pattern-matching.
|-
| '''[[SubSearch]]''' || Search for genes in a given subsystem or subsystem class.
|-
| '''[[DrugSearch]]''' || Show ''in silico'' docking results for select PDBs.
|}

All NMPDR searches allow you to download results in tab-delimited and XML formats. NMPDR searches that return a list of genes allow you to download the genes in FASTA format.

← Older revision		Revision as of 16:53, 26 July 2007
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	If you have a question about something in an NMPDR search form, mouse over the a question mark to get a hint. Click on the blue question mark to pop up the Wiki page on the subject. The blue question marks have been circled in the sample search form below.		If you have a question about something in an NMPDR search form, mouse over the a question mark to get a hint. Click on the blue question mark to pop up the Wiki page on the subject. The blue question marks have been circled in the sample search form below.

−	[[Image:~~BlueQMarks~~.png]]	+	[[Image:BlueQuestionMarks.png]]

← Older revision		Revision as of 21:25, 25 July 2007
Line 25:		Line 25:
	If you have a question about something in an NMPDR search form, mouse over the a question mark to get a hint. Click on the blue question mark to pop up the Wiki page on the subject. The blue question marks have been circled in the sample search form below.		If you have a question about something in an NMPDR search form, mouse over the a question mark to get a hint. Click on the blue question mark to pop up the Wiki page on the subject. The blue question marks have been circled in the sample search form below.

−	[[Image:BlueQMarks.png~~\|Sample search form~~]]	+	[[Image:BlueQMarks.png]]

@@ Line 23: / Line 23: @@
 Most NMPDR searches use a powerful [[Genome Control]] that allows you to choose one or more genomes according to various criteria. Some also use a search-engine style [[Keyword Box]]. The Keyword Box can also be found at the top of many of the NMPDR pages.
-If you have a question about something in an NMPDR search form, mouse over the blue question mark to get a hint. Click on the blue question mark to pop up the Wiki page on the subject. The blue question marks have been circled in the sample search form below.
+If you have a question about something in an NMPDR search form, mouse over the a question mark to get a hint. Click on the blue question mark to pop up the Wiki page on the subject. The blue question marks have been circled in the sample search form below.
 [[Image:BlueQMarks.png|Sample search form]]

← Older revision		Revision as of 21:31, 23 July 2007
Line 22:		Line 22:

	Most NMPDR searches use a powerful [[Genome Control]] that allows you to choose one or more genomes according to various criteria. Some also use a search-engine style [[Keyword Box]]. The Keyword Box can also be found at the top of many of the NMPDR pages.		Most NMPDR searches use a powerful [[Genome Control]] that allows you to choose one or more genomes according to various criteria. Some also use a search-engine style [[Keyword Box]]. The Keyword Box can also be found at the top of many of the NMPDR pages.
		+
		+	If you have a question about something in an NMPDR search form, mouse over the blue question mark to get a hint. Click on the blue question mark to pop up the Wiki page on the subject. The blue question marks have been circled in the sample search form below.
		+
		+	[[Image:BlueQMarks.png\|Sample search form]]

@@ Line 17: / Line 17: @@
 | '''[[DrugSearch]]''' || Show ''in silico'' docking results for select PDBs.
 |}
 The results of a search will generally start with data for the NMPDR [[core organisms]]. All NMPDR searches allow you to download results in tab-delimited and XML formats. NMPDR searches that return a list of genes also allow you to download the genes in FASTA format.
 Most NMPDR searches use a powerful [[Genome Control]] that allows you to choose one or more genomes according to various criteria. Some also use a search-engine style [[Keyword Box]]. The Keyword Box can also be found at the top of many of the NMPDR pages.

@@ Line 3: / Line 3: @@
 {|
-| '''[[OpSearch]]''' || Display genes of a single genome organized into operons.
+| '''[[DrugSearch]]''' || Show ''in silico'' docking results for select PDBs.
 |-
-| '''[[WordSearch]]''' || Display genes that match certain keywords.
+| '''[[FidSearch]]''' || Display genes from one or more genomes filtered by subsystem or keywords.
 |-
-| '''[[FidSearch]]''' || Display genes from one or more genomes filtered by subsystem or keywords.
+| '''[[OpSearch]]''' || Display genes of a single genome organized into operons.
 |-
 | '''[[SigGenes]]''' || Display genes that are common to a set of genomes, or that differentiate between two sets of genomes.
 |-
 | '''[[ToolSearch]]''' || Search for genes or DNA using BLAST or pattern-matching.
 |-
-| '''[[SubSearch]]''' || Search for genes in a given subsystem or subsystem class.
+| '''[[WordSearch]]''' || Display genes that match certain keywords.
 |}

← Older revision		Revision as of 20:48, 23 July 2007
Line 18:		Line 18:
	\|}		\|}

		+	The results of a search will generally start with data for the NMPDR [[core organisms]]. All NMPDR searches allow you to download results in tab-delimited and XML formats. NMPDR searches that return a list of genes also allow you to download the genes in FASTA format.

−	~~All~~ NMPDR searches ~~allow~~ you to ~~download results in tab~~-~~delimited and XML formats~~. ~~NMPDR searches that return a list~~ of ~~genes allow you to download~~ the ~~genes in FASTA format~~.	+	Most NMPDR searches use a powerful [[Genome Control]] that allows you to choose one or more genomes according to various criteria. Some also use a search-engine style [[Keyword Box]]. The Keyword Box can also be found at the top of many of the NMPDR pages.