BruceParrello: First real version

2007-07-28T17:33:27Z

First real version

BruceParrello: Safety save

2007-07-28T17:23:05Z

Safety save

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An alias is a gene identifier from an outside organization or database. Inside the NMPDR's data structures, the [[FIG ID]] is used for each gene. Each gene also has a list of aliases. There may be none, or there may be a dozen.

Refseq IDs are included without change, but most of the other aliases use a prefix to identify the type. The prefix ends with either a vertical bar (|) or colon (:). For example, the gene with a FIG ID of fig|100226.1.peg.3361 has the following aliases.

* '''GeneID:1098838''', its Gene ID
* '''gi|21221828''', its [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Protein&list_uids=21221828&dopt=GenPept Genbank ID]
* '''kegg|sco:SCO3401''', its [http://www.genome.ad.jp/dbget-bin/www_bget?sco+SCO3401 KEGG ID]
* '''NP_627607.1''', its [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=protein;cmd=search;term=NP_627607.1 Refseq ID]
* '''LocusTag:SCO3401''', its locus tag
* '''tr|Q9X8I1''', its [http://ca.expasy.org/uniprot/Q9X8I1 TREMBL ID]
* '''uni|Q9X8I1''', its [http://www.ebi.uniprot.org/uniprot-srv/uniProtView.do?proteinAc=Q9X8I1 UniProt ID]

Gene names (e.g. '''dnaK''' or '''grpE'') are also considered aliases.

← Older revision		Revision as of 17:33, 28 July 2007
Line 11:		Line 11:
	* '''uni\|Q9X8I1''', its [http://www.ebi.uniprot.org/uniprot-srv/uniProtView.do?proteinAc=Q9X8I1 UniProt ID]		* '''uni\|Q9X8I1''', its [http://www.ebi.uniprot.org/uniprot-srv/uniProtView.do?proteinAc=Q9X8I1 UniProt ID]

−	Gene names (e.g. '''dnaK''' or '''grpE'') are also considered aliases.	+	Gene names (e.g. '''dnaK''' or '''grpE''') are also considered aliases.

Alias - Revision history

BruceParrello: First real version

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