The Daily SEED


PUBSEED ANNOTATIONS

In 3 genomes
OLD: 23S rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23)
NEW: tRNA pseudouridine(32) synthase Yjbo

In 1 genome
OLD: 5-aminovalerate aminotransferase (EC 2.6.1.48) @ gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
NEW: gamma-Aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)

In 6 genomes
OLD: ABC transporter, ATP-binding protein (cluster 11, riboflavin/purine nucleoside/unknown) / ABC transporter, ATP-binding protein (cluster 11, riboflavin/purine nucleoside/unknown)
NEW: Nucleoside ABC transporter, ATP-binding protein

In 22 genomes
OLD: ABC transporter, permease protein 1 (cluster 11, riboflavin/purine nucleoside/unknown)
NEW: Nucleoside ABC transporter, permease protein 1

In 8 genomes
OLD: ABC transporter, permease protein 2 (cluster 11, riboflavin/purine nucleoside/unknown)
NEW: Nucleoside ABC transporter, permease protein 2

In 2 genomes
OLD: Acetyl-CoA synthetase (EC 6.2.1.1)
NEW: Propionate--CoA ligase (EC 6.2.1.17)

In 2 genomes
OLD: Acriflavin resistance protein
NEW: RND efflux system, inner membrane transporter

In 1 genome
OLD: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
NEW: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)

In 1 genome
OLD: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) based on FIGfams
NEW: Putrescine--pyruvate transaminase SpuC (EC 2.6.1.113)

In 1 genome
OLD: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) based on FIGfams
NEW: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)

In 1 genome
OLD: Alcohol dehydrogenase (EC 1.1.1.1) based on unreliable automated assignments
NEW: Putative 3-hydroxypropionate dehydrogenase DddB, Fe-containing

In 15 genomes
OLD: Aldehyde dehydrogenase (NAD(+)) (EC 1.2.1.3)
NEW: 4-(gamma-glutamylamino)butanal dehydrogenase (EC 1.2.1.99)

In 15 genomes
OLD: Aldehyde dehydrogenase (NAD(+)) (EC 1.2.1.3)
NEW: Malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18)

In 1 genome
OLD: Amidase, hydantoinase/carbamoylase (EC 3.5.1.87)
NEW: beta-ureidopropionase (EC 3.5.1.6)

In 1 genome
OLD: Antitoxin HigA
NEW: Putrescine utilization regulator PuuR

In 1 genome
OLD: Aromatic amino acid transport protein AroP
NEW: gamma-aminobutyrate (GABA) permease

In 1 genome
OLD: COG0006: Xaa-Pro aminopeptidase
NEW: Transcriptional regulator, Xre-cupin family

In 1 genome
OLD: COG0589: Universal stress protein UspA and related nucleotide-binding proteins
NEW: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)

In 1 genome
OLD: COG0665: Glycine/D-amino acid oxidases (deaminating)
NEW: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)

In 1 genome
OLD: COG0669: Phosphopantetheine adenylyltransferase
NEW: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)

In 1 genome
OLD: COG1063: Threonine dehydrogenase and related Zn-dependent dehydrogenases
NEW: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)

In 1 genome
OLD: COG1210: UDP-glucose pyrophosphorylase
NEW: Transcriptional regulator, Xre-cupin family

In 1 genome
OLD: COG1853: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
NEW: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)

In 1 genome
OLD: COG2326: Uncharacterized conserved protein
NEW: Transcriptional regulator, Xre-cupin family

In 1 genome
OLD: COG2608: Copper chaperone
NEW: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)

In 2 genomes
OLD: CaiB/BaiF family protein
NEW: L-carnitine dehydratase/bile acid-inducible protein F

In 1 genome
OLD: Cupin 2, conserved barrel
NEW: Cupin 2 barrel domain-containing protein

In 1 genome
OLD: Cupin 2, conserved barrel based on unreliable automated assignments
NEW: Cupin 2, conserved barrel domain protein

In 1 genome
OLD: Cupin 2, conserved barrel based on unreliable automated assignments
NEW: Cupin 2 barrel domain-containing protein

In 2 genomes
OLD: Cupin 2, conserved barrel domain protein
NEW: Cupin 2 barrel domain-containing protein

In 1 genome
OLD: Cupin 2, conserved barrel domain protein
NEW: Cupin 2 barrel domain-containing protein

In 2 genomes
OLD: Cupin 2, conserved barrel domain protein based on unreliable automated assignments
NEW: Cupin 2 barrel domain-containing protein

In 1 genome
OLD: Cupin 2, conserved barrel domain protein from original annotations
NEW: Cupin 2 barrel domain-containing protein

In 2 genomes
OLD: DNA-binding protein
NEW: Transcriptional regulator, Xre family

In 4 genomes
OLD: DUF924 protein
NEW: hypothetical protein

In 2 genomes
OLD: FIG00495787: hypothetical protein
NEW: Cupin 2 barrel domain-containing protein

In 6 genomes
OLD: FIG00759120: hypothetical protein
NEW: Cupin 2 barrel domain-containing protein

In 1 genome
OLD: FIG00808002: hypothetical protein
NEW: Cupin 2 barrel domain-containing protein

In 1 genome
OLD: FIG00912754: hypothetical protein
NEW: Cupin 2 barrel domain-containing protein

In 1 genome
OLD: FIG00955885: hypothetical protein
NEW: Transcriptional regulator, Xre family # fragment

In 7 genomes
OLD: FIG00958697: hypothetical protein
NEW: Transcriptional regulator, Xre family

In 2 genomes
OLD: FIG00996265: hypothetical protein
NEW: Cupin 2 barrel domain-containing protein

In 2 genomes
OLD: FIG01042476: hypothetical protein
NEW: Cupin 2 barrel domain-containing protein

In 1 genome
OLD: FIG01080555: hypothetical protein
NEW: Cupin 2 barrel domain-containing protein

In 1 genome
OLD: FIG01080758: hypothetical protein
NEW: Cupin 2 barrel domain-containing protein

In 1 genome
OLD: FIG01180215: hypothetical protein
NEW: Cupin 2, conserved barrel domain protein

In 1 genome
OLD: Fumarylacetoacetate hydrolase family protein
NEW: 3-fumarylpyruvate hydrolase (EC 3.7.1.20)

In 256 genomes
OLD: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
NEW: gamma-Aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)

In 5 genomes
OLD: Glutamine synthetase family protein
NEW: gamma-Glutamyl-putrescine synthetase (EC 6.3.1.11)

In 4 genomes
OLD: Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial (EC 6.3.5.7)
NEW: gamma-Aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)

In 1 genome
OLD: Helix-turn-helix domain protein
NEW: Transcriptional regulator, Xre family

In 1 genome
OLD: Inhibitor of vertebrate c-type lysozyme, outer membrane / Cupin domain
NEW: Cupin 2 barrel domain-containing protein

In 3 genomes
OLD: Integral membrane protein / tRNA guanosine(34) transglycosylase (EC 2.4.2.29)
NEW: Integral membrane protein / tRNA-guanosine(34) preQ1 transglycosylase (EC 2.4.2.29)

In 1 genome
OLD: KEGG: sat:SYN_00704 hypothetical cytosolic protein from original annotations
NEW: Cupin 2 barrel domain-containing protein

In 3 genomes
OLD: LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23)
NEW: tRNA pseudouridine(32) synthase Yjbo

In 1 genome
OLD: LysR family transcriptional regulator PA0133
NEW: Transcriptional regulator BauR

In 10 genomes
OLD: LysR family transcriptional regulator PA0133
NEW: Transcriptional regulator BauR

In 12 genomes
OLD: LysR family transcriptional regulator PA0133 based on FIGfams
NEW: Transcriptional regulator BauR

In 1 genome
OLD: Malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18)
NEW: Aldehyde dehydrogenase (NAD(+)) (EC 1.2.1.3)

In 1 genome
OLD: Mlr0979 protein based on unreliable automated assignments
NEW: Cupin 2 barrel domain-containing protein

In 2 genomes
OLD: N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)
NEW: beta-ureidopropionase (EC 3.5.1.6)

In 1 genome
OLD: None
NEW: gamma-Glutamyl-putrescine oxidase

In 7 genomes
OLD: None
NEW: Transcriptional regulator BauR

In 23 genomes
OLD: None
NEW: Transcriptional regulator, Xre-cupin family

In 18 genomes
OLD: None
NEW: Transcriptional regulator, Xre family

In 6 genomes
OLD: None
NEW: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)

In 2 genomes
OLD: None
NEW: Transcriptional regulator, Xre family # fragment

In 473 genomes
OLD: None
NEW: tRNA pseudouridine(32) synthase Yjbo

In 25 genomes
OLD: None
NEW: Cupin 2 barrel domain-containing protein

In 2 genomes
OLD: None
NEW: Putrescine--pyruvate transaminase SpuC (EC 2.6.1.113)

In 1142 genomes
OLD: None
NEW: Putrescine utilization regulator PuuR

In 2 genomes
OLD: Oligopeptide ABC transporter (EC 7.4.2.6), substrate-binding protein OppA
NEW: ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) # fragment

In 6 genomes
OLD: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
NEW: Putrescine--pyruvate transaminase SpuC (EC 2.6.1.113)

In 21 genomes
OLD: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
NEW: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)

In 2 genomes
OLD: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
NEW: Putrescine--pyruvate transaminase SpuC (EC 2.6.1.113)

In 10 genomes
OLD: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
NEW: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)

In 2 genomes
OLD: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) # fragment
NEW: beta-Alanine:pyruvate transaminase (EC 2.6.1.18) # fragment

In 2 genomes
OLD: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) based on FIGfams
NEW: Pyridoxal phosphate-dependent aminotransferase

In 4 genomes
OLD: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) based on FIGfams
NEW: Putrescine--pyruvate transaminase SpuC (EC 2.6.1.113)

In 24 genomes
OLD: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) based on FIGfams
NEW: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)

In 2 genomes
OLD: Oxidoreductase, FAD/FMN-binding
NEW: gamma-Glutamyl-putrescine oxidase

In 1 genome
OLD: Predicted transcriptional regulators
NEW: Transcriptional regulator, Xre-cupin family

In 1 genome
OLD: Predicted transcriptional regulators based on FIGfams
NEW: Transcriptional regulator, Xre-cupin family

In 14 genomes
OLD: Putative membrane protein
NEW: Permease of the drug/metabolite transporter (DMT) superfamily

In 1 genome
OLD: Putative oxidoreductase
NEW: Oxidoreductase

In 1 genome
OLD: Putative periplasmic protein
NEW: hypothetical protein

In 1 genome
OLD: Putrescine importer
NEW: Uncharacterized amino acid permease, GabP family

In 1 genome
OLD: Putrescine importer
NEW: Uncharacterized amino acid permease, GabP family

In 39 genomes
OLD: Putrescine utilization regulator
NEW: Putrescine utilization regulator PuuR

In 173 genomes
OLD: Putrescine utilization regulator
NEW: Putrescine utilization regulator PuuR

In 134 genomes
OLD: Putrescine utilization regulator based on FIGfams
NEW: Putrescine utilization regulator PuuR

In 5 genomes
OLD: Putrescine utilization regulator based on unreliable automated assignments
NEW: Putrescine utilization regulator PuuR

In 1 genome
OLD: Putrescine--pyruvate transaminase SpuC (EC 2.6.1.113)
NEW: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)

In 11 genomes
OLD: Putrescine-inducible gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
NEW: gamma-Aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)

In 1 genome
OLD: Putrescine-inducible gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
NEW: Putrescine--pyruvate transaminase SpuC (EC 2.6.1.113)

In 1 genome
OLD: Pyridoxal phosphate-dependent aminotransferase
NEW: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)

In 1 genome
OLD: Pyridoxal phosphate-dependent aminotransferase, Class III
NEW: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)

In 2 genomes
OLD: Pyridoxal phosphate-dependent aminotransferase, Class III
NEW: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)

In 2 genomes
OLD: Ribosomal large subunit pseudouridine synthase D (EC 5.4.99.23)
NEW: tRNA pseudouridine(32) synthase Yjbo

In 1 genome
OLD: S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) / tRNA guanosine(34) transglycosylase (EC 2.4.2.29)
NEW: S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) / tRNA-guanosine(34) preQ1 transglycosylase (EC 2.4.2.29)

In 1 genome
OLD: Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type
NEW: tRNA pseudouridine(32) synthase Yjbo # truncated N-terminus

In 105 genomes
OLD: Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type
NEW: tRNA pseudouridine(32) synthase Yjbo

In 56 genomes
OLD: Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type
NEW: tRNA pseudouridine(32) synthase Yjbo

In 1 genome
OLD: Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type # frameshift
NEW: tRNA pseudouridine(32) synthase Yjbo # frameshift

In 167 genomes
OLD: Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type based on FIGfams
NEW: tRNA pseudouridine(32) synthase Yjbo

In 6 genomes
OLD: Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type based on unreliable automated assignments
NEW: tRNA pseudouridine(32) synthase Yjbo

In 4 genomes
OLD: Sulfur utilization transcriptional regulator SutR, Cro/CI family
NEW: Transcriptional regulator, Xre-cupin family

In 47 genomes
OLD: Transcriptional regulator
NEW: Phage repressor protein cI

In 55 genomes
OLD: Transcriptional regulator
NEW: Transcriptional regulator, Xre-cupin family

In 24 genomes
OLD: Transcriptional regulator
NEW: Transcriptional regulator, Xre family

In 5 genomes
OLD: Transcriptional regulator Bxe_B2934, MocR family
NEW: Transcriptional regulator, MocR family

In 5 genomes
OLD: Transcriptional regulator PA0225
NEW: Transcriptional regulator, Xre-cupin family

In 3 genomes
OLD: Transcriptional regulator SCO0376, Xre-family with cupin domain
NEW: Transcriptional regulator, Xre-cupin family

In 2 genomes
OLD: Transcriptional regulator SCO5095, Xre-family with cupin domain
NEW: Transcriptional regulator, Xre-cupin family

In 1 genome
OLD: Transcriptional regulator based on unreliable automated assignments
NEW: Transcriptional regulator, Xre-cupin family

In 1 genome
OLD: Transcriptional regulator clustered with PA005&, LysR family
NEW: Transcriptional regulator, LysR family

In 17 genomes
OLD: Transcriptional regulator clustered with PA0057, LysR family
NEW: Transcriptional regulator, LysR family

In 32 genomes
OLD: Transcriptional regulator, Cro/CI family
NEW: Transcriptional regulator, Xre-cupin family

In 60 genomes
OLD: Transcriptional regulator, LysR family
NEW: Transcriptional regulator BauR

In 2 genomes
OLD: Transcriptional regulator, LysR family
NEW: Dimethylsulfoniopropionate utilization transcriptional regulator

In 1 genome
OLD: Transcriptional regulator, LysR family based on unreliable automated assignments
NEW: Transcriptional regulator BauR

In 11 genomes
OLD: Transcriptional regulator, MerR family
NEW: Transcriptional regulator, Xre-cupin family

In 12 genomes
OLD: Transcriptional regulator, MerR family based on FIGfams
NEW: Transcriptional regulator, Xre-cupin family

In 94 genomes
OLD: Transcriptional regulator, XRE-family with cupin domain
NEW: Transcriptional regulator, Xre-cupin family

In 25 genomes
OLD: Transcriptional regulator, Xre family
NEW: Transcriptional regulator, Xre family # fragment

In 123 genomes
OLD: Transcriptional regulator, Xre family
NEW: Transcriptional regulator, Xre-cupin family

In 556 genomes
OLD: Transcriptional regulator, Xre-family with cupin domain
NEW: Transcriptional regulator, Xre-cupin family

In 2 genomes
OLD: Transmembrane protein
NEW: hypothetical protein

In 2 genomes
OLD: Uncharacterized protein MJ1618
NEW: Cupin 2, conserved barrel domain protein

In 50 genomes
OLD: Uncharacterized protein PA0131
NEW: beta-alanine degradation protein BauB

In 1 genome
OLD: Uncharacterized protein PA0131
NEW: beta-alanine degradation protein BauB / SnoaL-like domain

In 2 genomes
OLD: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)
NEW: Pyridoxal phosphate-dependent aminotransferase, Class III

In 10 genomes
OLD: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)
NEW: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)

In 1 genome
OLD: cupin domain protein
NEW: Cupin 2, conserved barrel domain protein

In 1 genome
OLD: gamma-Glutamyl-putrescine synthetase (EC 6.3.1.11) / Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
NEW: gamma-Glutamyl-putrescine synthetase (EC 6.3.1.11) / Putrescine--pyruvate transaminase SpuC (EC 2.6.1.113)

In 936 genomes
OLD: gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
NEW: gamma-Aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)

In 1 genome
OLD: gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
NEW: Putrescine--pyruvate transaminase SpuC (EC 2.6.1.113)

In 17 genomes
OLD: gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
NEW: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)

In 3 genomes
OLD: gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) # fragment
NEW: gamma-Aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) # fragment

In 2 genomes
OLD: gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) # frameshift
NEW: gamma-Aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) # frameshift

In 274 genomes
OLD: gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94)
NEW: gamma-Glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94)

In 2 genomes
OLD: gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) # fragment
NEW: gamma-Glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94) # fragment

In 459 genomes
OLD: gamma-glutamyl-putrescine oxidase
NEW: gamma-Glutamyl-putrescine oxidase

In 918 genomes
OLD: gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)
NEW: gamma-Glutamyl-putrescine synthetase (EC 6.3.1.11)

In 1 genome
OLD: gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) / Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
NEW: gamma-Glutamyl-putrescine synthetase (EC 6.3.1.11) / Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)

In 1 genome
OLD: hypothetical cytosolic protein
NEW: Cupin 2 barrel domain-containing protein

In 1 genome
OLD: hypothetical cytosolic protein based on unreliable automated assignments
NEW: Cupin 2 barrel domain-containing protein

In 14 genomes
OLD: hypothetical protein
NEW: Cupin 2, conserved barrel domain protein

In 1 genome
OLD: hypothetical protein
NEW: Sensory box protein

In 3 genomes
OLD: hypothetical protein
NEW: Transmembrane protein

In 33 genomes
OLD: hypothetical protein
NEW: Cupin 2 barrel domain-containing protein

In 1 genome
OLD: hypothetical protein
NEW: Cupin 2, conserved barrel domain protein

In 6 genomes
OLD: hypothetical protein
NEW: Transcriptional regulator, Xre-cupin family

In 1 genome
OLD: hypothetical protein
NEW: Oxidoreductase

In 3 genomes
OLD: hypothetical protein
NEW: Cupin 2 barrel domain-containing protein

In 1 genome
OLD: hypothetical protein
NEW: beta-Alanine:pyruvate transaminase (EC 2.6.1.18)

In 4 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Cupin 2, conserved barrel domain protein

In 1 genome
OLD: hypothetical protein based on unreliable automated assignments
NEW: GGDEF domain-containing protein

In 2 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Transmembrane protein

In 1 genome
OLD: hypothetical protein based on unreliable automated assignments
NEW: Permease of the drug/metabolite transporter (DMT) superfamily

In 19 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Cupin 2 barrel domain-containing protein

In 2 genomes
OLD: protein of unknown function DUF1311 based on unreliable automated assignments
NEW: hypothetical protein

In 1 genome
OLD: putative exported protein
NEW: Cupin 2 barrel domain-containing protein

In 2 genomes
OLD: putative transcriptional regulator, XRE family
NEW: Transcriptional regulator, Xre-cupin family

In 1 genome
OLD: putative transcriptional regulator, XRE family based on unreliable automated assignments
NEW: Transcriptional regulator, Xre-cupin family

In 1 genome
OLD: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61)
NEW: tRNA-guanosine(34) preQ1 transglycosylase (EC 2.4.2.29) / SAM-dependent tRNA methyltransferase MXAN_4584

In 4854 genomes
OLD: tRNA guanosine(34) transglycosylase (EC 2.4.2.29)
NEW: tRNA-guanosine(34) preQ1 transglycosylase (EC 2.4.2.29)

In 2 genomes
OLD: tRNA guanosine(34) transglycosylase (EC 2.4.2.29) # frameshift
NEW: tRNA-guanosine(34) preQ1 transglycosylase (EC 2.4.2.29) # frameshift

In 25 genomes
OLD: tRNA guanosine(34) transglycosylase (EC 2.4.2.29) # truncated
NEW: tRNA-guanosine(34) preQ1 transglycosylase (EC 2.4.2.29) # truncated

In 1 genome
OLD: tRNA guanosine(34) transglycosylase (EC 2.4.2.29) / SAM-dependent tRNA methyltransferase MXAN_4584
NEW: tRNA-guanosine(34) preQ1 transglycosylase (EC 2.4.2.29) / SAM-dependent tRNA methyltransferase MXAN_4584

In 1 genome
OLD: tRNA guanosine(34) transglycosylase (EC 2.4.2.29) truncated by insertion
NEW: tRNA-guanosine(34) preQ1 transglycosylase (EC 2.4.2.29) # truncated by insertion

In 1 genome
OLD: tRNA guanosine(34) transglycosylase (EC 2.4.2.29) truncated by insertion
NEW: tRNA-guanosine(34) preQ1 transglycosylase (EC 2.4.2.29) # truncated

In 14 genomes
OLD: tRNA-dihydrouridine synthase DusB
NEW: tRNA-dihydrouridine synthase DusB ## D17

In 12 genomes
OLD: tRNA-dihydrouridine synthase DusB2
NEW: tRNA-dihydrouridine synthase 2 ## D20, D20a

RAST NEWS

(RAST Citations)


As of Thu Apr 22 07:10:16 2021, there are 7 jobs in the RAST queue

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PUBSEED GENOMES WEEKLY ANNOTATION ACTIVITY

Genome Name (# Annotations)

Burkholderia xenovorans LB400 (33)
Pseudomonas aeruginosa PAO1 (30)
Klebsiella oxytoca KCTC 1686 (25)
Lutiella nitroferrum 2002 (24)
Pseudomonas fluorescens PfO-1 (23)
Escherichia coli W3110 (23)
Pseudomonas aeruginosa MRW44.1 (23)
Pseudomonas putida KT2440 (23)
Pseudomonas aeruginosa PAO1 (23)
Pseudomonas aeruginosa PAO579 (23)
Escherichia coli BW2952 (22)
Escherichia coli str. K-12 substr. MDS42 (22)
Escherichia coli str. K-12 substr. MG1655 (22)
Escherichia coli J53 (22)
Escherichia coli XH001 (22)
Escherichia coli str. K-12 substr. MG1655 (22)
Pseudogulbenkiania ferrooxidans 2002 (22)
Escherichia coli str. K-12 substr. MG1655star (22)
Escherichia coli str. K-12 substr. DH10B (22)
Escherichia coli S17 (22)
Escherichia coli str. K-12 substr. W3110 (21)
Escherichia coli DH1 (21)
Escherichia coli XH140A (21)
Burkholderia xenovorans LB400 (21)
Pseudomonas fluorescens Pf0-1 (21)
Oceanimonas sp. GK1 (21)
Serratia proteamaculans 568 (21)
Burkholderia cepacia R18194 (20)
Pseudomonas aeruginosa MPAO1/P1 (20)
Pseudomonas aeruginosa MPAO1/P1 (20)
Escherichia coli str. K-12 substr. DH10B (20)
Pseudomonas fulva 12-X (20)
Escherichia coli K12 (20)
Pseudomonas putida KT2440 (19)
Pseudomonas aeruginosa MPAO1/P2 (19)
Pantoea ananatis LMG 20103 (19)
Pseudomonas aeruginosa MPAO1/P2 (19)
Escherichia coli STEC_EH250 (18)
Escherichia coli KTE130 (18)
Escherichia coli KTE51 (18)
Escherichia coli KTE197 (18)
Escherichia sp. 4_1_40B (18)
Dickeya chrysanthemi NCPPB 3533 (18)
Escherichia coli DEC7B (18)
Vibrio anguillarum 96F (18)
Escherichia coli TW15901 (18)
Escherichia coli KTE77 (18)
Escherichia coli KTE132 (18)
Escherichia coli MS 116-1 (18)
Vibrio anguillarum 775 (18)
Photobacterium profundum SS9 (18)
Escherichia coli KTE14 (18)