The Daily SEED


PUBSEED ANNOTATIONS

In 1 genome
OLD: ATPase involved in chromosome partitioning
NEW: ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog

In 1 genome
OLD: Ammonium transporter
NEW: Ammonium transporter AmtB

In 3 genomes
OLD: Anion-transporting ATPase # truncated
NEW: Cytosolic Fe-S cluster assembling factor NBP35

In 1 genome
OLD: AstB/ChuR-related protein based on unreliable automated assignments
NEW: SCIFF radical SAM maturase

In 1 genome
OLD: CAAX amino terminal protease family protein
NEW: Bacteriocin-processing protease, CAAX family

In 1 genome
OLD: COG2710: Nitrogenase molybdenum-iron protein, alpha and beta chains
NEW: Nitrogenase molybdenum-iron protein beta chain (EC 1.18.6.1)

In 1 genome
OLD: Cobyrinic acid a,c-diamide synthase based on unreliable automated assignments
NEW: Cytosolic Fe-S cluster assembling factor NBP35

In 1 genome
OLD: Cysteine desulfurase (EC 2.8.1.7) based on FIGfams
NEW: Cysteine desulfurase (EC 2.8.1.7) => NifS

In 1 genome
OLD: Cysteine synthase (EC 2.5.1.47) based on FIGfams
NEW: Cystathionine beta-synthase (EC 4.2.1.22)

In 1 genome
OLD: Cytosolic Fe-S cluster assembling factor NBP35
NEW: ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog

In 4 genomes
OLD: Dinitrogenase iron-molybdenum cofactor biosynthesis based on unreliable automated assignments
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 2 genomes
OLD: Dinitrogenase iron-molybdenum cofactor biosynthesis protein based on unreliable automated assignments
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 2 genomes
OLD: FIG01176846: hypothetical protein
NEW: Putative periplasmic ATP/GTP-binding protein

In 1 genome
OLD: FIG168882: metal-dependent phosphoesterases (PHP family)
NEW: PHP domain protein

In 1 genome
OLD: FIG176532: Sensory transduction histidine kinases
NEW: Histidine kinase

In 6 genomes
OLD: Fe-Mo cluster-binding protein, NifX family
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 2 genomes
OLD: FeMo cofactor biosynthesis protein NifB
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 1 genome
OLD: Lactoylglutathione lyase (EC 4.4.1.5)
NEW: Nitrogenase FeMo-cofactor carrier protein NifX / Lactoylglutathione lyase (EC 4.4.1.5)

In 1 genome
OLD: Lactoylglutathione lyase (EC 4.4.1.5) based on unreliable automated assignments
NEW: Nitrogenase FeMo-cofactor carrier protein NifX / Lactoylglutathione lyase (EC 4.4.1.5)

In 1 genome
OLD: Methylcobalamin methyltransferase
NEW: Methylcobalamin methyltransferase

In 1 genome
OLD: Methylcobalamin methyltransferase MMP0831
NEW: Methylcobalamin methyltransferase

In 2 genomes
OLD: NADH peroxidase-like protein
NEW: Dihydrolipoamide dehydrogenase (EC 1.8.1.4)

In 2 genomes
OLD: Na+-driven multidrug efflux pump
NEW: MATE efflux family protein

In 4 genomes
OLD: NifB-domain protein, type 2
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 32 genomes
OLD: NifB-domain protein, type 2
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 6 genomes
OLD: NifB-domain protein, type 2 based on FIGfams
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 2 genomes
OLD: NifB-domain protein, type 2 based on unreliable automated assignments
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 3 genomes
OLD: NifY protein
NEW: Nitrogenase cofactor carrier protein NafY

In 6 genomes
OLD: NifY protein based on FIGfams
NEW: Nitrogenase cofactor carrier protein NafY

In 1 genome
OLD: Nitrogen fixation-related protein based on unreliable automated assignments
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 3 genomes
OLD: Nitrogen regulatory protein P-II
NEW: Putative regulatory protein clustered with metal efflux genes, P-II family

In 2 genomes
OLD: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
NEW: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE

In 1 genome
OLD: Nitrogenase (vanadium-iron) alpha chain (EC 1.18.6.1) based on unreliable automated assignments
NEW: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)

In 1 genome
OLD: Nitrogenase (vanadium-iron) beta chain (EC 1.18.6.1)
NEW: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)

In 2 genomes
OLD: Nitrogenase FeMo-cofactor carrier protein NifX
NEW: Nitrogenase cofactor carrier protein NafY

In 4 genomes
OLD: Nitrogenase FeMo-cofactor carrier protein NifX
NEW: Nitrogenase cofactor carrier protein NafY

In 1 genome
OLD: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE based on FIGfams
NEW: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE # fragment

In 3 genomes
OLD: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN / Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 1 genome
OLD: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
NEW: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB type 2

In 36 genomes
OLD: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
NEW: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB type 2

In 1 genome
OLD: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 1 genome
OLD: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
NEW: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB # fragment

In 27 genomes
OLD: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB based on FIGfams
NEW: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB type 2

In 1 genome
OLD: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB based on FIGfams
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 2 genomes
OLD: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB based on unreliable automated assignments
NEW: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB type 2

In 3 genomes
OLD: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB based on unreliable automated assignments
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 18 genomes
OLD: Nitrogenase cofactor carrier protein NafY
NEW: NifY protein

In 2 genomes
OLD: Nitrogenase cofactor carrier protein NafY
NEW: NifY protein

In 2 genomes
OLD: Nitrogenase cofactor carrier protein NafY based on FIGfams
NEW: NifY protein

In 1 genome
OLD: Nitrogenase subunit NifH paralog, type 1
NEW: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH

In 7 genomes
OLD: Nitrogenase subunit NifH paralog, type 1
NEW: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH

In 6 genomes
OLD: Nitrogenase subunit NifH paralog, type 1 based on FIGfams
NEW: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH

In 3 genomes
OLD: Nitrogenase vanadium-cofactor synthesis protein VnfN
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 2 genomes
OLD: None
NEW: Nitrogenase molybdenum-iron protein beta chain (EC 1.18.6.1)

In 3 genomes
OLD: None
NEW: Nitrogenase cofactor carrier protein NafY

In 2 genomes
OLD: None
NEW: NifY protein

In 1 genome
OLD: None
NEW: Nitrogen fixation-related protein

In 1 genome
OLD: None
NEW: Di-[4Fe-4S] ferredoxin-like protein, nitrogenase-associated

In 1 genome
OLD: None
NEW: Putative periplasmic ATP/GTP-binding protein

In 4 genomes
OLD: None
NEW: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB type 2

In 1 genome
OLD: None
NEW: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH

In 14 genomes
OLD: None
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 3 genomes
OLD: None
NEW: Uncharacterized protein Bsu1558.5

In 1 genome
OLD: Nucleotide-binding protein based on FIGfams
NEW: Cytosolic Fe-S cluster assembling factor NBP35

In 1 genome
OLD: Nucleotide-binding protein based on unreliable automated assignments
NEW: Cytosolic Fe-S cluster assembling factor NBP35

In 1 genome
OLD: Pheromone shutdown protein based on FIGfams
NEW: Pheromone shutdown protein TraB

In 1 genome
OLD: Protein of unknown function DUF134
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 1 genome
OLD: Protein of unknown function DUF134 based on unreliable automated assignments
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 4 genomes
OLD: Putative ammonium transporter MJ1343
NEW: Ammonium transporter AmtB

In 1 genome
OLD: Radical SAM based on unreliable automated assignments
NEW: SCIFF radical SAM maturase

In 1 genome
OLD: Radical SAM domain protein
NEW: moaA/nifB/pqqE family protein

In 4 genomes
OLD: Similar to nitrogenase FeMo-cofactor carrier protein NifX
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 3 genomes
OLD: Similar to nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
NEW: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB type 2

In 1 genome
OLD: Transcriptional regulator
NEW: SCIFF radical SAM maturase

In 1 genome
OLD: Uncharacterized protein MJ0580
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 1 genome
OLD: arylsulfatase regulator based on unreliable automated assignments
NEW: SCIFF radical SAM maturase

In 1 genome
OLD: conserved hypothetical protein based on unreliable automated assignments
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 2 genomes
OLD: dinitrogenase iron-molybdenum cofactor family protein
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 1 genome
OLD: dinitrogenase iron-molybdenum cofactor protein based on unreliable automated assignments
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 2 genomes
OLD: ferredoxin, 2Fe-2S based on unreliable automated assignments
NEW: Ferredoxin, 2Fe-2S

In 1 genome
OLD: hypothetical protein
NEW: Phosphodiesterase MJ0936

In 2 genomes
OLD: hypothetical protein
NEW: Ammonium transporter AmtB

In 1 genome
OLD: hypothetical protein
NEW: moaA/nifB/pqqE family protein

In 1 genome
OLD: hypothetical protein
NEW: Nitrogen fixation-related protein

In 6 genomes
OLD: hypothetical protein
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 1 genome
OLD: hypothetical protein
NEW: Bacteriocin-processing protease, CAAX family

In 2 genomes
OLD: hypothetical protein
NEW: Dinitrogenase iron-molybdenum cofactor biosynthesis

In 1 genome
OLD: hypothetical protein
NEW: MTH1175-like domain family protein

In 2 genomes
OLD: hypothetical protein
NEW: Acetyltransferase, GNAT family

In 1 genome
OLD: hypothetical protein
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 1 genome
OLD: hypothetical protein
NEW: SCIFF radical SAM maturase

In 1 genome
OLD: hypothetical protein
NEW: moaA/nifB/pqqE family protein

In 1 genome
OLD: hypothetical protein
NEW: Uncharacterized protein Bsu1558.5

In 1 genome
OLD: hypothetical protein based on unreliable automated assignments
NEW: Nitrogen fixation-related protein

In 1 genome
OLD: hypothetical protein based on unreliable automated assignments
NEW: Putative transporter

In 8 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 4 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: MTH1175-like domain family protein

In 1 genome
OLD: hypothetical protein based on unreliable automated assignments
NEW: Uncharacterized protein MJ0582

In 3 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Uncharacterized protein Bsu1558.5

In 1 genome
OLD: isopropylmalate/homocitrate/citramalate synthase-like protein
NEW: Homocitrate synthase 1 (EC 2.3.3.14)

In 1 genome
OLD: nitrogenase iron-molybdenum cofactor maturation domain protein based on unreliable automated assignments
NEW: Nitrogenase FeMo-cofactor carrier protein NifX

In 1 genome
OLD: nucleotide-binding protein (putative ATPase)
NEW: Cytosolic Fe-S cluster assembling factor NBP35

In 1 genome
OLD: nucleotide-binding protein based on unreliable automated assignments
NEW: Cytosolic Fe-S cluster assembling factor NBP35

In 1 genome
OLD: pheromone shutdown protein TraB
NEW: Pheromone shutdown protein TraB

RAST NEWS

(RAST Citations)


As of Sat Jul 2 14:10:14 2022, there are 5 jobs in the RAST queue

RAST Hourly Queue

RAST Daily Queue

RAST Weekly Queue

PUBSEED GENOMES WEEKLY ANNOTATION ACTIVITY

Genome Name (# Annotations)

Pseudomonas stutzeri A1501 (842)
Pseudomonas stutzeri A1501 (829)
Pseudomonas stutzeri DSM 4166 (247)
Pseudomonas stutzeri XLDN-R (243)
Pseudomonas stutzeri T13 (237)
Pseudomonas stutzeri ATCC 17588 = LMG 11199 (225)
Clostridium kluyveri DSM 555 (18)
Geobacter sp. FRC-32 (15)
Syntrophobotulus glycolicus DSM 8271 (14)
Stigmatella aurantiaca DW4/3-1 (13)
Pseudomonas stutzeri ATCC 14405 = CCUG 16156 (13)
Rivularia sp. PCC 7116 (12)
Desulfitobacterium sp. Y51 (10)
Gloeocapsa sp. PCC 7428 (10)
Ktedonobacter racemifer DSM 44963 (10)
Desulfitobacterium hafniense DCB-2 (10)
Amycolatopsis mediterranei U32 (9)
Clostridium kluyveri DSM 555 (9)
Desulfitobacterium hafniense DCB-2 (9)
Clostridium kluyveri NBRC 12016 (9)
Methylobacterium extorquens PA1 (9)
Methanococcus aeolicus Nankai-3 (9)
Methanosarcina acetivorans C2A (9)
Pseudomonas stutzeri CCUG 29243 (9)
Streptomyces coelicolor A3(2) (8)
Coprococcus comes ATCC 27758 (8)
Pseudomonas stutzeri RCH2 (8)
Mycobacterium ulcerans Agy99 (8)
Nostoc sp. PCC 7120 (8)
Paenibacillus curdlanolyticus YK9 (8)
Paenibacillus sp. JDR-2 (8)
Rhodomicrobium vannielii ATCC 17100 (8)
Nostoc sp. PCC 7120 (8)
Kribbella flavida DSM 17836 (8)
Mycobacterium tuberculosis F11 (7)
Desulfitobacterium hafniense Y51 (7)
Rhodopseudomonas palustris CGA009 (7)
Nostoc punctiforme PCC 73102 (7)
Mycobacterium tuberculosis H37Rv (7)
Rhodococcus equi 103S (7)
Rhodomicrobium vannielii ATCC 17100 (7)
Caldicellulosiruptor hydrothermalis 108 (7)
Nostoc punctiforme PCC 73102 (7)
Anabaena variabilis ATCC 29413 (7)
Thermomonospora curvata DSM 43183 (7)
Mycobacterium tuberculosis CDC1551 (7)
Calothrix sp. PCC 7507 (7)
Thermomonospora curvata DSM 43183 (7)
Pseudomonas stutzeri NF13 (7)
Amycolatopsis mediterranei S699 (7)
Saccharopolyspora erythraea NRRL 2338 (7)
Methanococcus maripaludis S2 (7)