The Daily SEED


PUBSEED ANNOTATIONS

In 5 genomes
OLD: FIG00402982: hypothetical protein
NEW: FIG00898184: hypothetical protein

In 9 genomes
OLD: FIG00402982: hypothetical protein based on FIGfams
NEW: FIG00898184: hypothetical protein

In 3 genomes
OLD: FIG00406332: hypothetical protein
NEW: FIG00935908: hypothetical protein

In 14 genomes
OLD: FIG00406332: hypothetical protein based on FIGfams
NEW: FIG00935908: hypothetical protein

In 9 genomes
OLD: FIG00898772: hypothetical protein
NEW: FIG00935908: hypothetical protein

In 2 genomes
OLD: FIG00939667: hypothetical protein
NEW: FIG00935908: hypothetical protein

In 2 genomes
OLD: FIG00939667: hypothetical protein based on FIGfams
NEW: FIG00935908: hypothetical protein

In 3 genomes
OLD: L-tyrosine decarboxylase (EC 4.1.1.25)
NEW: Pyridoxal-dependent decarboxylase

In 13 genomes
OLD: None
NEW: FIG00935908: hypothetical protein

In 32 genomes
OLD: None
NEW: Brivudine/sorivudine hydrolase

In 1 genome
OLD: None
NEW: L-tyrosine decarboxylase (EC 4.1.1.25)

In 22 genomes
OLD: None
NEW: Na+/H+ antiporter NhaC

In 1 genome
OLD: None
NEW: FIG00898184: hypothetical protein

In 3 genomes
OLD: None
NEW: hypothetical protein

In 1 genome
OLD: Outer membrane protein
NEW: FIG00935908: hypothetical protein

In 188 genomes
OLD: Predicted tyrosine transporter, NhaC family
NEW: Na+/H+ antiporter NhaC

In 2 genomes
OLD: Predicted tyrosine transporter, NhaC family
NEW: Na+/H+ antiporter NhaC

In 2 genomes
OLD: Predicted tyrosine transporter, NhaC family based on FIGfams
NEW: Na+/H+ antiporter NhaC

In 2 genomes
OLD: Purine nucleoside phosphorylase (EC 2.4.2.1)
NEW: Brivudine/sorivudine hydrolase

In 5 genomes
OLD: Purine nucleoside phosphorylase (EC 2.4.2.1) based on FIGfams
NEW: Brivudine/sorivudine hydrolase

In 31 genomes
OLD: UPF0365 protein YqfA
NEW: DUF1432 domain-containing protein

In 1 genome
OLD: Uncharacterized amino acid permease, GabP family
NEW: Tyrosine/tyramine antiporter

In 1 genome
OLD: hypothetical protein
NEW: FIG00935908: hypothetical protein

In 1 genome
OLD: hypothetical protein
NEW: FIG00898184: hypothetical protein

In 4 genomes
OLD: hypothetical protein
NEW: FIG00935908: hypothetical protein

In 4 genomes
OLD: hypothetical protein
NEW: FIG00898184: hypothetical protein

In 22 genomes
OLD: hypothetical protein based on FIGfams
NEW: FIG00935908: hypothetical protein

In 15 genomes
OLD: hypothetical protein based on FIGfams
NEW: FIG00898184: hypothetical protein

In 26 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: FIG00935908: hypothetical protein

In 20 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: FIG00898184: hypothetical protein

RAST NEWS

(RAST Citations)


As of Tue Jul 16 21:10:03 2019, there are 14 jobs in the RAST queue

RAST Hourly Queue

RAST Daily Queue

RAST Weekly Queue

PUBSEED GENOMES WEEKLY ANNOTATION ACTIVITY

Genome Name (# Annotations)

Escherichia coli 2872000 (214)
Escherichia coli O104:H4 str. H112180541 (62)
Escherichia coli APEC O1 (62)
Escherichia coli O10:K5(L):H4 str. ATCC 23506 (62)
Escherichia coli O104:H4 str. TY-2482 (62)
Escherichia coli O104:H4 str. 11-4522 (62)
Escherichia coli O104:H4 str. 11-4632 C4 (62)
Escherichia coli O104:H4 str. H112180280 (62)
Escherichia coli O104:H4 str. TY-2482 (62)
Escherichia coli O104:H4 str. H112180282 (62)
Escherichia coli O104:H4 str. 04-8351 (62)
Escherichia coli P0299917.3 (62)
Escherichia coli P02997067.6 (61)
Escherichia coli P0302293.9 (61)
Escherichia coli str. K-12 substr. MG1655 (61)
Escherichia coli str. K-12 substr. W3110 (61)
Escherichia coli O104:H4 str. LB226692 (61)
Escherichia coli P0302293.7 (61)
Escherichia coli str. K-12 substr. MG1655star (61)
Escherichia coli P0302293.4 (61)
Escherichia coli O104:H4 str. 2009EL-2050 (60)
Escherichia coli P0302308.1 (60)
Escherichia coli O104:H4 str. H112180283 (60)
Escherichia coli O104:H4 str. Ec11-5603 (60)
Escherichia coli O104:H4 str. Ec11-5604 (60)
Escherichia coli O157:H7 (60)
Escherichia coli O104:H4 str. Ec11-4987 (60)
Escherichia coli 55989 (60)
Escherichia coli P0302308.5 (60)
Escherichia coli O104:H4 str. Ec12-0465 (60)
Escherichia coli O104:H4 str. 11-4632 C2 (60)
Escherichia coli O104:H4 str. 11-4404 (60)
Escherichia coli O104:H4 str. 09-7901 (60)
Escherichia coli O104:H4 str. 11-4632 C5 (60)
Escherichia coli E1520 (60)
Escherichia coli O104:H4 str. Ec11-5536 (60)
Escherichia coli O104:H4 str. GOS2 (60)
Escherichia coli O104:H4 str. 11-4632 C3 (60)
Escherichia coli 2785200 (60)
Escherichia coli O104:H4 str. 11-3677 (60)
Escherichia coli P0302308.2 (60)
Escherichia coli O104:H4 str. Ec11-4984 (60)
Escherichia coli O104:H4 str. 2009EL-2071 (60)
Escherichia coli 99.1805 (59)
Escherichia coli EC4013 (59)
Escherichia coli PA2 (59)
Escherichia coli KTE22 (59)
Escherichia coli 99.0848 (59)
Escherichia coli TW10246 (59)
Escherichia coli str. K-12 substr. MDS42 (59)
Escherichia coli 99.1775 (59)
Escherichia coli KTE27 (59)