The Daily SEED


PUBSEED ANNOTATIONS

In 1 genome
OLD: Addiction module toxin, RelE/StbE
NEW: Death on curing protein, Doc toxin

In 2 genomes
OLD: Antitoxin DinJ (binds YafQ toxin)
NEW: Prevent host death protein, Phd antitoxin

In 2 genomes
OLD: Antitoxin HigA
NEW: RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)

In 4 genomes
OLD: Antitoxin to Toxin 1, PIN domain
NEW: Prevent host death protein, Phd antitoxin

In 3 genomes
OLD: DNA-binding protein
NEW: Antitoxin HigA

In 2 genomes
OLD: DNA-binding protein
NEW: Antitoxin HigA

In 1 genome
OLD: DNA-binding protein based on FIGfams
NEW: Antitoxin HigA

In 1 genome
OLD: DNA-binding protein based on unreliable automated assignments
NEW: Antitoxin HigA

In 1 genome
OLD: FIG00974708: hypothetical protein
NEW: Antitoxin HigA

In 1 genome
OLD: FIG00975452: hypothetical protein
NEW: hypothetical protein

In 1 genome
OLD: Helix-turn-helix domain protein
NEW: Antitoxin HigA

In 3 genomes
OLD: Helix-turn-helix motif
NEW: Antitoxin HigA

In 8 genomes
OLD: Helix-turn-helix motif based on unreliable automated assignments
NEW: Antitoxin HigA

In 1 genome
OLD: None
NEW: Partition protein C

In 1 genome
OLD: None
NEW: Uncharacterized MFS-type transporter

In 4 genomes
OLD: None
NEW: mRNA interferase RelE

In 2 genomes
OLD: None
NEW: Death on curing protein, Doc toxin

In 16 genomes
OLD: None
NEW: Antitoxin HigA

In 1 genome
OLD: None
NEW: RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)

In 7 genomes
OLD: None
NEW: Prevent host death protein, Phd antitoxin

In 1 genome
OLD: None
NEW: VapB protein (antitoxin to VapC)

In 1 genome
OLD: None
NEW: ParE toxin protein

In 1 genome
OLD: ParE toxin protein
NEW: Death on curing protein, Doc toxin

In 3 genomes
OLD: Partition protein C
NEW: Prevent host death protein, Phd antitoxin

In 109 genomes
OLD: Phage DNA binding protein
NEW: Antitoxin HigA

In 1 genome
OLD: Phage transcriptional regulator cro
NEW: Antitoxin HigA

In 1 genome
OLD: PilT protein-like based on unreliable automated assignments
NEW: Death on curing protein, Doc toxin

In 1 genome
OLD: Plasmid addiction system poison protein based on unreliable automated assignments
NEW: mRNA interferase RelE

In 1 genome
OLD: Plasmid stabilization system based on unreliable automated assignments
NEW: mRNA interferase RelE

In 1 genome
OLD: Predicted transcriptional regulator from original annotations
NEW: RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)

In 1 genome
OLD: Predicted transcriptional regulators
NEW: Antitoxin HigA

In 1 genome
OLD: Predicted transcriptional regulators
NEW: Antitoxin HigA

In 14 genomes
OLD: Prevent host death protein, Phd antitoxin
NEW: Antitoxin DinJ (binds YafQ toxin)

In 4 genomes
OLD: Prevent host death protein, Phd antitoxin
NEW: Prevent host death protein, Phd antitoxin # fragment

In 2 genomes
OLD: Prevent host death protein, Phd antitoxin # D
NEW: Prevent host death protein, Phd antitoxin

In 1 genome
OLD: Prevent host death protein, Phd antitoxin # D
NEW: Prevent host death protein, Phd antitoxin

In 1 genome
OLD: Prevent-host-death protein based on unreliable automated assignments
NEW: RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)

In 1 genome
OLD: Prevent-host-death protein based on unreliable automated assignments
NEW: Antitoxin HigA

In 1 genome
OLD: Prevent-host-death protein based on unreliable automated assignments
NEW: Prevent host death protein, Phd antitoxin

In 2 genomes
OLD: Putative bacteriophage protein
NEW: mRNA interferase RelE

In 96 genomes
OLD: Putative regulatory protein
NEW: Antitoxin HigA

In 1 genome
OLD: RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)
NEW: VapB protein (antitoxin to VapC)

In 1 genome
OLD: Toxin 1, PIN domain
NEW: Death on curing protein, Doc toxin

In 20 genomes
OLD: Transcriptional regulator
NEW: Antitoxin HigA

In 1 genome
OLD: Transcriptional regulator, Xre family
NEW: RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)

In 27 genomes
OLD: Transcriptional regulator, Xre family
NEW: Antitoxin HigA

In 1 genome
OLD: YoeB toxin protein
NEW: mRNA interferase RelE

In 1 genome
OLD: helix-turn-helix motif
NEW: Antitoxin HigA

In 1 genome
OLD: helix-turn-helix motif based on unreliable automated assignments
NEW: Antitoxin HigA

In 1 genome
OLD: hypothetical protein
NEW: Partition protein C

In 2 genomes
OLD: hypothetical protein
NEW: RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)

In 3 genomes
OLD: hypothetical protein
NEW: Antitoxin HigA

In 1 genome
OLD: hypothetical protein
NEW: Toxin

In 1 genome
OLD: hypothetical protein
NEW: Prevent host death protein, Phd antitoxin

In 3 genomes
OLD: hypothetical protein
NEW: Antitoxin HigA

In 3 genomes
OLD: hypothetical protein
NEW: Prevent host death protein, Phd antitoxin

In 1 genome
OLD: hypothetical protein based on FIGfams
NEW: Antitoxin HigA

In 2 genomes
OLD: hypothetical protein based on FIGfams
NEW: Prevent host death protein, Phd antitoxin

In 1 genome
OLD: hypothetical protein based on unreliable automated assignments
NEW: Partition protein C

In 7 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Antitoxin HigA

In 5 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Toxin

In 6 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Prevent host death protein, Phd antitoxin

In 2 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: mRNA interferase RelE

In 4 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Death on curing protein, Doc toxin

In 1 genome
OLD: mRNA interferase RelE
NEW: Death on curing protein, Doc toxin

In 1 genome
OLD: partition protein C
NEW: Partition protein C

In 1 genome
OLD: probable DNA binding protein YPO0883
NEW: Antitoxin HigA

In 1 genome
OLD: probable DNA binding protein YPO0883
NEW: Antitoxin HigA

In 1 genome
OLD: transcriptional regulator, AbrB family
NEW: Antitoxin to Toxin 1, PIN domain

In 2 genomes
OLD: transcriptional regulator, AbrB family based on unreliable automated assignments
NEW: Antitoxin to Toxin 1, PIN domain

In 1 genome
OLD: transcriptional regulator, XRE family based on unreliable automated assignments
NEW: RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)

RAST NEWS

(RAST Citations)


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PUBSEED GENOMES WEEKLY ANNOTATION ACTIVITY

Genome Name (# Annotations)

Calothrix sp. PCC 7507 (26)
Archaeoglobus fulgidus DSM 4304 (25)
Geobacter uraniireducens Rf4 (21)
Thioalkalivibrio nitratireducens DSM 14787 (21)
Rhizobium leguminosarum bv. viciae 3841 (20)
Arthrospira platensis NIES-39 (18)
Mycobacterium smegmatis str. MC2 155 (17)
Pseudonocardia dioxanivorans CB1190 (17)
Cyanothece sp. ATCC 51142 (16)
Rhizobium leguminosarum bv. viciae 3841 (16)
Thiothrix nivea DSM 5205 (15)
Accumulibacter phosphatis clade IIA str. UW-1 (14)
Thermococcus kodakarensis KOD1 (14)
Mycobacterium vanbaaleni vanbaalenii PYR-1 (14)
Azoarcus sp. EbN1 (14)
Halothece sp. PCC 7418 (14)
Crinalium epipsammum PCC 9333 (14)
Geobacter uraniireducens Rf4 (13)
Desulfobacca acetoxidans DSM 11109 (13)
Azospirillum sp. B510 (12)
Verrucosispora maris AB-18-032 (12)
Mycobacterium vanbaalenii PYR-1 (12)
Cyanothece sp. ATCC 51142 (12)
Pirellula staleyi DSM 6068 (12)
Acaryochloris marina MBIC11017 (12)
Aromatoleum aromaticum EbN1 (12)
Gloeobacter violaceus PCC 7421 (12)
Methylomirabilis oxyfera (12)
Synechocystis sp. PCC 6803 (12)
Thauera sp. MZ1T (12)
Rhodococcus opacus B4 (12)
Blastopirellula marina DSM 3645 (12)
Sulfolobus tokodaii str. 7 (12)
Mycobacterium tuberculosis EAI/OSDD271 (11)
Nocardia farcinica IFM 10152 (11)
Nocardia farcinica IFM 10152 (11)
Roseiflexus sp. RS-1 (11)
Mycobacterium tuberculosis PR05 (11)
Opitutus terrae PB90-1 (11)
Methylovulum miyakonense HT12 (11)
Cyanothece sp. ATCC 51472 (11)
Roseiflexus castenholzi DSM 13941 (11)
Methylomonas methanica MC09 (11)
Dactylococcopsis salina PCC 8305 (11)
Mycobacterium bovis str. 06-0380 (10)
Mycobacterium bovis str. 06-4031 (10)
Mycobacterium bovis str. 10-8965 (10)
Mycobacterium bovis str. 94-0704 (10)
Mycobacterium bovis str. 11-5428 (10)
Mycobacterium bovis str. 11-0766 (10)
Mycobacterium bovis str. 09-3328 (10)
Methylobacterium radiotolerans JCM 2831 (10)