The Daily SEED


PUBSEED ANNOTATIONS

In 1 genome
OLD: ABC transporter, ATP-binding protein
NEW: ECF transporter, ATPase component of energizing module

In 2 genomes
OLD: ABC transporter, RND-adapter-like protein
NEW: Copper/silver efflux RND transporter, membrane fusion protein CusB

In 2 genomes
OLD: ATP-binding protein, Mrp/Nbp35 family
NEW: Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like

In 5 genomes
OLD: ATP-binding protein, Mrp/Nbp35 family based on FIGfams
NEW: Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like

In 1 genome
OLD: ATP-binding protein, Mrp/Nbp35 family based on unreliable automated assignments
NEW: Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like

In 2 genomes
OLD: Acetyltransferase
NEW: Acetyltransferase, GNAT family

In 2 genomes
OLD: Acriflavin resistance protein
NEW: RND efflux system, inner membrane transporter

In 3 genomes
OLD: Alr7636 protein
NEW: Cupredoxin

In 3 genomes
OLD: Asl7591 protein
NEW: hypothetical protein

In 2 genomes
OLD: Blr3520 protein homolog, hypothetical protein
NEW: hypothetical protein

In 1 genome
OLD: C505_FUSOX Bifunctional P-450:NADPH-P450 reductase (Fatty acid omega-hydroxylase) (P450foxy)
NEW: Cytochrome P450 102A3 (EC 1.14.14.1) / NADPH--cytochrome P450 reductase (EC 1.6.2.4)

In 3 genomes
OLD: Ca ion P-type ATPase
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 17 genomes
OLD: Ca ion P-type ATPase
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 1 genome
OLD: Cation transporting ATPase, N-terminal:Haloacid dehalogenase-like hydrolase:Cation transporting ATPase, C-terminal:E1-E2 ATPase- associated region based on unreliable automated assignments
NEW: Cation-transporting ATPase, E1-E2 family

In 1 genome
OLD: Cation transporting ATPase, N-terminal:Haloacid dehalogenase-like hydrolase:Cation transporting ATPase, C-terminal:E1-E2 ATPase-associated region based on unreliable automated assignments
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 1 genome
OLD: Cation-transporting ATPase
NEW: Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 2 genomes
OLD: Cation-transporting ATPase
NEW: Cation-transporting ATPase, E1-E2 family

In 9 genomes
OLD: Cation-transporting ATPase
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 4 genomes
OLD: Cation-transporting ATPase
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 1 genome
OLD: Cation-transporting ATPase PacL based on unreliable automated assignments
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 3 genomes
OLD: Cation-transporting ATPase based on unreliable automated assignments
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 68 genomes
OLD: Cation-transporting ATPase, E1-E2 family
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 23 genomes
OLD: Cation-transporting ATPase, E1-E2 family
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 1 genome
OLD: Cation-transporting ATPase, E1-E2 family?
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 1 genome
OLD: Cation/multidrug efflux pump based on FIGfams
NEW: RND efflux system, inner membrane transporter

In 2 genomes
OLD: Cation/multidrug efflux pump based on unreliable automated assignments
NEW: RND efflux system, inner membrane transporter

In 25 genomes
OLD: Cobalt ABC transporter, ATP-binding component CbtL
NEW: Cobalt/Copper ABC transporter, ATP-binding protein CbtL

In 237 genomes
OLD: Cobalt ABC transporter, ATP-binding protein CbtL
NEW: Cobalt/Copper ABC transporter, ATP-binding protein CbtL

In 18 genomes
OLD: Cobalt ABC transporter, periplasmic substrate-binding component CbtJ
NEW: Cobalt/Copper ABC transporter, substrate-binding protein CbtJ

In 23 genomes
OLD: Cobalt ABC transporter, permease component CbtK
NEW: Cobalt/Copper ABC transporter, permease protein CbtK

In 35 genomes
OLD: Cobalt ABC transporter, permease protein CbtK
NEW: Cobalt/Copper ABC transporter, permease protein CbtK

In 307 genomes
OLD: Cobalt ABC transporter, substrate-binding protein CbtJ
NEW: Cobalt/Copper ABC transporter, substrate-binding protein CbtJ

In 1 genome
OLD: Cobalt ABC transporter, substrate-binding protein CbtJ # fragment
NEW: Cobalt/Copper ABC transporter, substrate-binding protein CbtJ # fragment

In 2 genomes
OLD: Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA
NEW: RND efflux system, inner membrane transporter

In 2 genomes
OLD: Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein CzcB
NEW: CzcABC family efflux RND transporter, membrane fusion protein

In 1 genome
OLD: Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein CzcB
NEW: Copper/silver efflux RND transporter, membrane fusion protein CusB / Copper/silver efflux RND transporter, periplasmic protein CusF

In 2 genomes
OLD: Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family
NEW: Copper/silver efflux RND transporter, membrane fusion protein CusB

In 2 genomes
OLD: Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family based on FIGfams
NEW: Copper/silver efflux RND transporter, membrane fusion protein CusB

In 2 genomes
OLD: Cobalt/zinc/cadmium efflux RND transporter, outer membrane protein CzcC
NEW: CzcABC family efflux RND transporter, outer membrane protein

In 2 genomes
OLD: Cobalt/zinc/cadmium efflux RND transporter, transmembrane protein CzcA
NEW: CzcABC family efflux RND transporter, transmembrane protein

In 1 genome
OLD: Cobalt/zinc/cadmium efflux RND transporter, transmembrane protein CzcA
NEW: Copper/silver efflux RND transporter, transmembrane protein CusA

In 16 genomes
OLD: Copper ABC transporter, ATP-binding component
NEW: Cobalt/Copper ABC transporter, ATP-binding protein CbtL

In 15 genomes
OLD: Copper ABC transporter, periplasmic substrate-binding component
NEW: Cobalt/Copper ABC transporter, substrate-binding protein CbtJ

In 16 genomes
OLD: Copper ABC transporter, permease component
NEW: Cobalt/Copper ABC transporter, permease protein CbtK

In 1 genome
OLD: Copper-binding protein based on unreliable automated assignments
NEW: Copper binding protein, plastocyanin/azurin family

In 2 genomes
OLD: Copper-exporting ATPase (EC 3.6.3.4)
NEW: Cupredoxin

In 2 genomes
OLD: Copper-exporting ATPase (EC 3.6.3.4)
NEW: Cupredoxin

In 11 genomes
OLD: Copper-exporting ATPase (EC 3.6.3.4) based on FIGfams
NEW: Cupredoxin

In 5 genomes
OLD: Copper-exporting ATPase (EC 3.6.3.4) based on unreliable automated assignments
NEW: Cupredoxin

In 2 genomes
OLD: Copper-translocating P-type ATPase (EC 3.6.3.4)
NEW: Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 1 genome
OLD: Copper-translocating P-type ATPase (EC 3.6.3.4)
NEW: Cupredoxin / Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 1 genome
OLD: Copper-transporting ATPase
NEW: Cupredoxin

In 4 genomes
OLD: Copper-transporting ATPase
NEW: Cupredoxin

In 4 genomes
OLD: Copper-transporting ATPase based on FIGfams
NEW: Cupredoxin

In 7 genomes
OLD: Copper-transporting ATPase based on unreliable automated assignments
NEW: Cupredoxin

In 1 genome
OLD: Copper/silver efflux RND transporter, membrane fusion protein CusB
NEW: Copper/silver efflux RND transporter, membrane fusion protein CusB

In 11 genomes
OLD: Copper/silver efflux RND transporter, periplasmic protein CusF
NEW: Cupredoxin

In 3 genomes
OLD: Copper/silver efflux RND transporter, transmembrane protein CusA
NEW: CzcABC family efflux RND transporter, transmembrane protein

In 2 genomes
OLD: Copper/silver efflux RND transporter, transmembrane protein CusA
NEW: Cobalt/zinc/cadmium efflux RND transporter, transmembrane protein CzcA

In 1 genome
OLD: Cu+ P-type ATPase
NEW: Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 2 genomes
OLD: Cu+ P-type ATPase
NEW: Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 4 genomes
OLD: Cu+ P-type ATPase #(EC 3.6.3.4);(TC# 3.A.3.5.15)
NEW: Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 1 genome
OLD: Cu+ P-type ATPase #(EC 3.6.3.4);(TC# 3.A.3.5.18)
NEW: Cupredoxin / Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 1 genome
OLD: Cu+ P-type ATPase #(EC 3.6.3.4);(TC# 3.A.3.5.19)
NEW: Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 1 genome
OLD: Cu+ P-type ATPase #(EC 3.6.3.4);(TC# 3.A.3.5.30)
NEW: Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 2 genomes
OLD: Cu+ P-type ATPase fragment #(EC 3.6.3.4);(TC# 3.A.3.5.7)
NEW: Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 9 genomes
OLD: Cupredoxin
NEW: Azurin

In 10 genomes
OLD: Cupredoxin
NEW: Copper/silver efflux RND transporter, periplasmic protein CusF

In 3 genomes
OLD: Cytochrome P450 102 (EC 1.14.14.1) / NADPH--cytochrome P450 reductase (EC 1.6.2.4)
NEW: Cytochrome P450 102A3 (EC 1.14.14.1) / NADPH--cytochrome P450 reductase (EC 1.6.2.4)

In 1 genome
OLD: Cytochrome c biogenesis protein, transmembrane region:Heavy metal transport/detoxification protein based on unreliable automated assignments
NEW: Cupredoxin

In 1 genome
OLD: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
NEW: Cupredoxin

In 2 genomes
OLD: Cytochrome c oxidase polypeptide II (EC 1.9.3.1) based on FIGfams
NEW: Cupredoxin

In 31 genomes
OLD: CzcABC family efflux RND transporter, membrane fusion protein
NEW: Copper/silver efflux RND transporter, membrane fusion protein CusB

In 2 genomes
OLD: CzcABC family efflux RND transporter, membrane fusion protein
NEW: Cupredoxin

In 4 genomes
OLD: CzcABC family efflux RND transporter, membrane fusion protein
NEW: hypothetical protein

In 2 genomes
OLD: CzcABC family efflux RND transporter, outer membrane protein
NEW: Efflux transport system, outer membrane factor (OMF) lipoprotein

In 40 genomes
OLD: CzcABC family efflux RND transporter, outer membrane protein
NEW: Copper/silver efflux RND transporter, outer membrane protein CusC

In 1 genome
OLD: CzcABC family efflux RND transporter, outer membrane protein
NEW: Copper/silver efflux RND transporter, outer membrane protein CusC # fragment

In 29 genomes
OLD: CzcABC family efflux RND transporter, transmembrane protein
NEW: Copper/silver efflux RND transporter, transmembrane protein CusA

In 1 genome
OLD: CzcABC family efflux RND transporter, transmembrane protein
NEW: Cobalt/zinc/cadmium efflux RND transporter, transmembrane protein CzcA

In 6 genomes
OLD: CzcABC family heavy metal efflux RND transporter, transmembrane protein
NEW: Cobalt/zinc/cadmium efflux RND transporter, transmembrane protein CzcA

In 3 genomes
OLD: CzcB family efflux RND transporter, membrane fusion protein
NEW: Copper/silver efflux RND transporter, membrane fusion protein CusB

In 3 genomes
OLD: Dihydrolipoamide dehydrogenase (EC 1.8.1.4); Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)
NEW: Dihydrolipoamide dehydrogenase (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)

In 1 genome
OLD: Dihydrolipoamide dehydrogenase (EC 1.8.1.4); Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) Based on inheritance from PEG fig|4932.3.peg.2263
NEW: Dihydrolipoamide dehydrogenase (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)

In 4 genomes
OLD: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)
NEW: RclA-like protein

In 1 genome
OLD: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) / Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) based on FIGfams
NEW: Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4)

In 1 genome
OLD: Dihydrolipoamide dehydrogenase of acetoin dehydrogenase (EC 1.8.1.4), truncated
NEW: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) # truncated

In 1 genome
OLD: Dihydrolipoamide dehydrogenase of acetoin dehydrogenase (EC 1.8.1.4), truncated by transposition event
NEW: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) # truncated

In 1 genome
OLD: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) / Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
NEW: Dihydrolipoamide dehydrogenase (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)

In 20 genomes
OLD: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) / Dihydrolipoamide dehydrogenase (EC 1.8.1.4) based on FIGfams
NEW: Dihydrolipoamide dehydrogenase (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)

In 1 genome
OLD: Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase) based on unreliable automated assignments
NEW: Dihydrolipoamide dehydrogenase (EC 1.8.1.4) # fragment

In 2 genomes
OLD: Extracellular protein
NEW: Aggregation promoting factor

In 2 genomes
OLD: FIG00513332: hypothetical protein
NEW: hypothetical protein

In 3 genomes
OLD: FIG00532250: hypothetical protein
NEW: hypothetical protein

In 1 genome
OLD: FIG00532250: hypothetical protein based on FIGfams
NEW: hypothetical protein

In 2 genomes
OLD: FIG00580116: hypothetical protein
NEW: RND efflux system, inner membrane transporter

In 1 genome
OLD: FIG00672020: hypothetical protein
NEW: hypothetical protein

In 1 genome
OLD: FIG00678563: hypothetical protein
NEW: hypothetical protein

In 1 genome
OLD: FIG00729081: hypothetical protein
NEW: hypothetical protein

In 2 genomes
OLD: FIG00764466: hypothetical protein
NEW: Copper/silver efflux RND transporter, outer membrane protein CusC

In 1 genome
OLD: FIG01061391: hypothetical protein
NEW: hypothetical protein

In 11 genomes
OLD: FIG01117288: hypothetical protein
NEW: F-EET protein EetA

In 1 genome
OLD: FIG01117288: hypothetical protein based on FIGfams
NEW: F-EET protein EetA

In 1 genome
OLD: FUPA25 P-type ATPase
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 1 genome
OLD: Ferredoxin--sulfite reductase [NADPH] (EC 1.8.1.2)
NEW: Uncharacterized reductase # truncated

In 1 genome
OLD: HYPOTHETICAL 31.4 KDA PROTEIN
NEW: hypothetical protein

In 1 genome
OLD: HYPOTHETICAL 31.4 KDA PROTEIN
NEW: hypothetical protein

In 2 genomes
OLD: Heavy metal RND efflux outer membrane protein, CzcC family
NEW: CzcABC family efflux RND transporter, outer membrane protein

In 7 genomes
OLD: Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein
NEW: Heavy-metal-associated domain / Cupredoxin

In 5 genomes
OLD: Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein based on FIGfams
NEW: Heavy-metal-associated domain / Cupredoxin

In 6 genomes
OLD: Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein based on unreliable automated assignments
NEW: Heavy-metal-associated domain / Cupredoxin

In 6 genomes
OLD: Heme/copper-type cytochrome/quinol oxidases, subunit 2
NEW: Cupredoxin

In 4 genomes
OLD: Heme/copper-type cytochrome/quinol oxidases, subunit 2 based on FIGfams
NEW: Cupredoxin

In 1 genome
OLD: Heme/copper-type cytochrome/quinol oxidases, subunit 2 based on unreliable automated assignments
NEW: Cupredoxin

In 1 genome
OLD: Heptaprenyl diphosphate synthase component I (EC 2.5.1.30)
NEW: Heptaprenyl diphosphate synthase component I (EC 2.5.1.30) @ F-EET protein EetB

In 6 genomes
OLD: Heptaprenyl diphosphate synthase component I (EC 2.5.1.30) based on FIGfams
NEW: Heptaprenyl diphosphate synthase component I (EC 2.5.1.30) @ F-EET protein EetB

In 67 genomes
OLD: Inner membrane protein RclC associated with response to reactive chlorine species
NEW: RclC-like protein

In 3 genomes
OLD: Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)
NEW: Copper/silver efflux RND transporter, membrane fusion protein CusB

In 2 genomes
OLD: Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)
NEW: Cupredoxin

In 5 genomes
OLD: Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 1 genome
OLD: Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)
NEW: Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 1 genome
OLD: Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)
NEW: Cu2+ exporting P-type ATPase (EC 7.2.2.9) @ Ag+ exporting P-type ATPase (EC 7.2.2.15) @ Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 2 genomes
OLD: Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)
NEW: Cupredoxin / Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 4 genomes
OLD: Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)
NEW: Cupredoxin

In 3 genomes
OLD: Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4)
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 16 genomes
OLD: Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) based on FIGfams
NEW: Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 2 genomes
OLD: Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) based on FIGfams
NEW: Cu2+ exporting P-type ATPase (EC 7.2.2.9) @ Ag+ exporting P-type ATPase (EC 7.2.2.15) @ Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 10 genomes
OLD: Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) based on FIGfams
NEW: Cupredoxin / Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 4 genomes
OLD: Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) based on FIGfams
NEW: Cupredoxin

In 1 genome
OLD: Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) based on unreliable automated assignments
NEW: Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 1 genome
OLD: Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) based on unreliable automated assignments
NEW: Cupredoxin

In 1 genome
OLD: Likely secreted protein containing plastocyanin domain
NEW: Cupredoxin

In 5 genomes
OLD: Likely secreted protein containing plastocyanin domain
NEW: Cupredoxin

In 3 genomes
OLD: Likely secreted protein containing plastocyanin domain based on FIGfams
NEW: Cupredoxin

In 10 genomes
OLD: Likely secreted protein containing plastocyanin domain based on unreliable automated assignments
NEW: Cupredoxin

In 1 genome
OLD: Major facilitator family transporter
NEW: Nitrate/nitrite transporter NarK # truncated

In 1 genome
OLD: Major facilitator family transporter
NEW: Nitrate/nitrite transporter NarK

In 1 genome
OLD: Mercuric resistance operon regulatory protein
NEW: Cu(I)-responsive transcriptional regulator

In 1 genome
OLD: Mercuric resistance operon regulatory protein based on FIGfams
NEW: Cu(I)-responsive transcriptional regulator

In 3 genomes
OLD: Multicopper oxidase
NEW: hypothetical protein

In 3 genomes
OLD: Multicopper oxidase
NEW: Copper/silver efflux RND transporter, periplasmic protein CusF

In 2 genomes
OLD: N-acetylmuramoyl-L-alanine amidase, family 4
NEW: Pheromone response surface protein PrgC

In 3 genomes
OLD: N-acetylmuramoyl-L-alanine amidase, family 4 based on FIGfams
NEW: Pheromone response surface protein PrgC

In 15 genomes
OLD: NADH dehydrogenase (EC 1.6.99.3)
NEW: NADH dehydrogenase (EC 1.6.99.3) implicatd in EET

In 41 genomes
OLD: NADH dehydrogenase (EC 1.6.99.3) based on FIGfams
NEW: NADH dehydrogenase (EC 1.6.99.3) implicatd in EET

In 1 genome
OLD: NADPH-cytochrome P450 reductase
NEW: Cytochrome P450 102A3 (EC 1.14.14.1) / NADPH--cytochrome P450 reductase (EC 1.6.2.4)

In 1 genome
OLD: NADPH-cytochrome P450 reductase
NEW: Cytochrome P450 102A3 (EC 1.14.14.1) / NADPH--cytochrome P450 reductase (EC 1.6.2.4)

In 2 genomes
OLD: Nitrate/nitrite transporter
NEW: Nitrate/nitrite transporter NarK

In 1 genome
OLD: Nitrate/nitrite transporter NarK
NEW: Nitrate/nitrite transporter NarK # fragment

In 3 genomes
OLD: Nitrate/nitrite transporter NarK
NEW: Nitrate/nitrite transporter NarK/U 1 / Nitrate/nitrite transporter NarK

In 13 genomes
OLD: Nitrate/nitrite transporter NarK
NEW: Nitrate/nitrite transporter NarK

In 376 genomes
OLD: Nitrate/nitrite transporter NarK/U
NEW: Nitrate/nitrite transporter NarK

In 1 genome
OLD: Nitrate/nitrite transporter NarK/U # fragment
NEW: Nitrate/nitrite transporter NarK # fragment

In 2 genomes
OLD: Nitrate/nitrite transporter NarK/U # frameshift
NEW: Nitrate/nitrite transporter NarK # frameshift

In 204 genomes
OLD: Nitrate/nitrite transporter NarK/U 1 / Nitrate/nitrite transporter NarK/U
NEW: Nitrate/nitrite transporter NarK/U 1 / Nitrate/nitrite transporter NarK

In 2 genomes
OLD: Nitrogen regulatory protein P-II
NEW: Nitrogen regulatory protein P-II

In 34 genomes
OLD: None
NEW: Cytochrome P450 102A3 (EC 1.14.14.1) / NADPH--cytochrome P450 reductase (EC 1.6.2.4)

In 1 genome
OLD: None
NEW: RclA-like protein # fragment

In 159 genomes
OLD: None
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 3 genomes
OLD: None
NEW: Heavy-metal-associated domain / Cupredoxin

In 8 genomes
OLD: None
NEW: Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 4 genomes
OLD: None
NEW: Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like

In 2 genomes
OLD: None
NEW: Pheromone response surface protein PrgC

In 1 genome
OLD: None
NEW: 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) # fragment

In 13 genomes
OLD: None
NEW: Cupredoxin / Cu+ exporting P-type ATPase (EC 7.2.2.8)

In 97 genomes
OLD: None
NEW: Putative pheromone precursor lipoprotein, related to Cad

In 1 genome
OLD: None
NEW: Dihydrolipoamide dehydrogenase (EC 1.8.1.4)

In 2 genomes
OLD: None
NEW: Two-component transcriptional response regulator, OmpR family

In 1 genome
OLD: None
NEW: F-EET protein EetA

In 1 genome
OLD: None
NEW: Copper/silver efflux RND transporter, outer membrane protein CusC

In 256 genomes
OLD: None
NEW: NADH dehydrogenase (EC 1.6.99.3) implicatd in EET

In 1 genome
OLD: None
NEW: Cu(I)-responsive transcriptional regulator

In 8 genomes
OLD: None
NEW: RclC-like protein

In 4 genomes
OLD: None
NEW: Heptaprenyl diphosphate synthase component I (EC 2.5.1.30) @ F-EET protein EetB

In 1 genome
OLD: None
NEW: RND-type multidrug efflux pump, membrane permease

In 8 genomes
OLD: None
NEW: hypothetical protein

In 15 genomes
OLD: None
NEW: Dihydrolipoamide dehydrogenase (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)

In 1 genome
OLD: None
NEW: Ferredoxin--sulfite reductase, bacillial type (EC 1.8.7.1)

In 234 genomes
OLD: None
NEW: Uncharacterized protein RclA associated with response to reactive chlorine species

In 334 genomes
OLD: None
NEW: RclA-like protein

In 61 genomes
OLD: None
NEW: Cupredoxin

In 1 genome
OLD: Periplasmic decaheme cytochrome c, MtrD
NEW: Cytochrome c family protein

In 8 genomes
OLD: Pheromone cAD1 precursor lipoprotein Cad
NEW: Putative pheromone precursor lipoprotein, related to Cad

In 6 genomes
OLD: Pheromone cAD1 precursor lipoprotein Cad
NEW: Putative pheromone precursor lipoprotein, related to Cad

In 3 genomes
OLD: Pheromone cAD1 precursor lipoprotein Cad based on FIGfams
NEW: Putative pheromone precursor lipoprotein, related to Cad

In 18 genomes
OLD: Polyprenyltransferase, substrate unknown
NEW: 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74)

In 1 genome
OLD: Possible secreted protein in the cAD1 pheromone cluater
NEW: F-EET protein EetA

In 1 genome
OLD: Predicted membrane protein
NEW: hypothetical protein

In 1 genome
OLD: Probable Co/Zn/Cd efflux system membrane fusion protein
NEW: CzcABC family efflux RND transporter, membrane fusion protein

In 64 genomes
OLD: Probable bifunctional P-450/NADPH-P450 reductase CypD
NEW: Cytochrome P450 102A3 (EC 1.14.14.1) / NADPH--cytochrome P450 reductase (EC 1.6.2.4)

In 5 genomes
OLD: Probable bifunctional P-450/NADPH-P450 reductase CypE
NEW: Cytochrome P450 102A3 (EC 1.14.14.1) / NADPH--cytochrome P450 reductase (EC 1.6.2.4)

In 1 genome
OLD: Probable cation-transporting P-type ATPase (EC 3.6.3.-)
NEW: Cation-transporting ATPase, E1-E2 family

In 1 genome
OLD: Protein export element (Fragment)
NEW: F-EET protein EetA

In 1 genome
OLD: Protein export element (Fragment) based on FIGfams
NEW: F-EET protein EetA

In 3 genomes
OLD: Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4); Mercuric ion reductase (EC 1.16.1.1); PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase
NEW: RclA-like protein

In 7 genomes
OLD: Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4); Mercuric ion reductase (EC 1.16.1.1); PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase
NEW: RclA-like protein BT1542

In 5 genomes
OLD: Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4); Mercuric ion reductase (EC 1.16.1.1); PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase
NEW: RclA-like protein # truncated

In 2 genomes
OLD: Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4); Mercuric ion reductase (EC 1.16.1.1); PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase
NEW: RclA-like protein # frameshift

In 135 genomes
OLD: Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4); Mercuric ion reductase (EC 1.16.1.1); PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase
NEW: RclA-like protein

In 64 genomes
OLD: Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4); Mercuric ion reductase (EC 1.16.1.1); PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase
NEW: Uncharacterized protein RclA associated with response to reactive chlorine species

In 1 genome
OLD: Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4); Mercuric ion reductase (EC 1.16.1.1); PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase based on FIGfams
NEW: RclA-like protein # fragment

In 14 genomes
OLD: Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4); Mercuric ion reductase (EC 1.16.1.1); PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase based on FIGfams
NEW: RclA-like protein

In 10 genomes
OLD: Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4); Mercuric ion reductase (EC 1.16.1.1); PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase based on FIGfams
NEW: Uncharacterized protein RclA associated with response to reactive chlorine species

In 1 genome
OLD: Putative membrane protein
NEW: Uncharacterized membrane protein Tcr_2099

In 11 genomes
OLD: Putative membrane protein
NEW: Heavy-metal-associated domain / Cupredoxin

In 1 genome
OLD: Putative pheromone precursor lipoprotein
NEW: Putative pheromone precursor lipoprotein, related to Cad

In 10 genomes
OLD: Putative pheromone precursor lipoprotein
NEW: Putative pheromone precursor lipoprotein, related to Cad

In 23 genomes
OLD: Putative polysaccharide deacetylase
NEW: Polysaccharide deacetylase

In 1 genome
OLD: Putative prenyltransferase, contains 1,4-dihydroxy-2-naphthoate octaprenyltransferase domain
NEW: 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74)

In 2 genomes
OLD: Putative prenyltransferase, contains 1,4-dihydroxy-2-naphthoate octaprenyltransferase domain
NEW: 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) # fragment

In 1 genome
OLD: Putative prenyltransferase, contains 1,4-dihydroxy-2-naphthoate octaprenyltransferase domain based on unreliable automated assignments
NEW: 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) # fragment

In 450 genomes
OLD: Putative prenyltransferase, contains 1,4-dihydroxy-2-naphthoate polyprenyltransferase domain
NEW: 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74)

In 1 genome
OLD: Putative regulatory protein clustered with metal efflux genes, P-II family
NEW: Nitrogen regulatory protein P-II

In 2 genomes
OLD: Putative secreted glycosyl hydrolase
NEW: Azurin

In 1 genome
OLD: RND efflux system, inner membrane transporter
NEW: Copper/silver efflux RND transporter, transmembrane protein CusA

In 1 genome
OLD: RND efflux system, membrane fusion protein
NEW: Copper/silver efflux RND transporter, membrane fusion protein CusB

In 1 genome
OLD: RND efflux system, membrane fusion protein
NEW: Copper/silver efflux RND transporter, periplasmic protein CusF

In 4 genomes
OLD: RND multidrug efflux transporter; Acriflavin resistance protein
NEW: RND efflux system, inner membrane transporter

In 1 genome
OLD: RND multidrug efflux transporter; Acriflavin resistance protein based on unreliable automated assignments
NEW: Copper/silver efflux RND transporter, transmembrane protein CusA

In 2 genomes
OLD: RclA-like protein # truncated
NEW: RclA-like protein # frameshift

In 1 genome
OLD: Secreted repeat of unknown function based on unreliable automated assignments
NEW: Copper binding protein, plastocyanin/azurin family

In 1 genome
OLD: Sensory histidine kinase QseC
NEW: Copper sensory histidine kinase CusS

In 1 genome
OLD: Sensory histidine kinase QseC based on FIGfams
NEW: Copper sensory histidine kinase CusS

In 206 genomes
OLD: Similar to heptaprenyl diphosphate synthase component II
NEW: Heptaprenyl diphosphate synthase component II (EC 2.5.1.30)

In 1 genome
OLD: Sulfite reductase (NADPH2) alpha chain hemoprotein (EC 1.8.1.2)
NEW: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)

In 1 genome
OLD: Sulfite reductase (NADPH2) alpha chain hemoprotein (EC 1.8.1.2) Based on inheritance from PEG fig|4932.3.peg.3647
NEW: Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2)

In 2 genomes
OLD: Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2)
NEW: Similar to sulfite reductase [NADPH] flavoprotein alpha-component

In 12 genomes
OLD: Surface antigen
NEW: hypothetical protein

In 5 genomes
OLD: Transcriptional regulator, MarR family
NEW: Negative transcriptional regulator-copper transport operon

In 16 genomes
OLD: Transcriptional regulator, MerR family
NEW: Cu(I)-responsive transcriptional regulator

In 1 genome
OLD: Transcriptional regulator, MerR family
NEW: Cu(I)-responsive transcriptional regulator

In 1 genome
OLD: Transcriptional regulator, MerR family based on FIGfams
NEW: Cu(I)-responsive transcriptional regulator

In 1 genome
OLD: Tryptophan synthase beta chain (EC 4.2.1.20)
NEW: Tryptophan synthase (indole-salvaging) (EC 4.2.1.122)

In 4 genomes
OLD: Two component system histidine kinase (EC 2.7.3.-)
NEW: Two-component system sensor histidine kinase

In 1 genome
OLD: Two-component response regulator SA14-24
NEW: Two-component transcriptional response regulator, OmpR family

In 3 genomes
OLD: Two-component response regulator SA14-24 based on FIGfams
NEW: Two-component transcriptional response regulator, OmpR family

In 1 genome
OLD: acriflavin resistance protein
NEW: RND efflux system, inner membrane transporter

In 1 genome
OLD: acriflavin resistance protein based on unreliable automated assignments
NEW: RND efflux system, inner membrane transporter

In 1 genome
OLD: bifunctional P-450:NADPH-P450 reductase 1
NEW: Cytochrome P450 102A3 (EC 1.14.14.1) / NADPH--cytochrome P450 reductase (EC 1.6.2.4)

In 7 genomes
OLD: bifunctional P-450:NADPH-P450 reductase 1
NEW: Cytochrome P450 102A3 (EC 1.14.14.1) / NADPH--cytochrome P450 reductase (EC 1.6.2.4)

In 19 genomes
OLD: bifunctional P-450:NADPH-P450 reductase 1 based on FIGfams
NEW: Cytochrome P450 102A3 (EC 1.14.14.1) / NADPH--cytochrome P450 reductase (EC 1.6.2.4)

In 1 genome
OLD: cation-transporting ATPase
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 4 genomes
OLD: cation-transporting ATPase PacL
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 2 genomes
OLD: cation-transporting ATPase PacL based on FIGfams
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 10 genomes
OLD: cation-transporting ATPase PacL based on unreliable automated assignments
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 1 genome
OLD: cation-transporting ATPase based on unreliable automated assignments
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 3 genomes
OLD: cation-transporting ATPase, E1-E2 family
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 1 genome
OLD: conserved hypothetical protein, Cof family, truncated based on unreliable automated assignments
NEW: Hydrolase, HAD superfamily

In 1 genome
OLD: copper binding protein, plastocyanin/azurin family based on unreliable automated assignments
NEW: Copper binding protein, plastocyanin/azurin family

In 1 genome
OLD: copper-translocating P-type ATPase( EC:3.6.3.4 ) based on unreliable automated assignments
NEW: Cupredoxin

In 1 genome
OLD: cytochrome C oxidase, subunit II (cbaB)
NEW: Cupredoxin

In 3 genomes
OLD: cytochrome C oxidase, subunit II (cbaB) based on unreliable automated assignments
NEW: Cupredoxin

In 1 genome
OLD: cytochrome C oxidase, subunit II, putative
NEW: Cupredoxin

In 1 genome
OLD: cytochrome c oxidase subunit II based on unreliable automated assignments
NEW: Cupredoxin

In 1 genome
OLD: hypothetical protein
NEW: F-EET protein EetA

In 2 genomes
OLD: hypothetical protein
NEW: Azurin

In 9 genomes
OLD: hypothetical protein
NEW: Cupredoxin

In 1 genome
OLD: hypothetical protein
NEW: Cupredoxin / Polyferredoxin

In 5 genomes
OLD: hypothetical protein
NEW: Copper/silver efflux RND transporter, periplasmic protein CusF

In 2 genomes
OLD: hypothetical protein
NEW: Cytochrome P450 102A3 (EC 1.14.14.1) / NADPH--cytochrome P450 reductase (EC 1.6.2.4)

In 1 genome
OLD: hypothetical protein
NEW: Copper binding protein, plastocyanin/azurin family

In 1 genome
OLD: hypothetical protein
NEW: RND efflux system, inner membrane transporter

In 3 genomes
OLD: hypothetical protein
NEW: Cytochrome c family protein

In 1 genome
OLD: hypothetical protein
NEW: Permease of the drug/metabolite transporter (DMT) superfamily

In 4 genomes
OLD: hypothetical protein
NEW: Cupredoxin

In 2 genomes
OLD: hypothetical protein
NEW: Ca2+-transporting ATPase (EC 7.2.2.10)

In 1 genome
OLD: hypothetical protein
NEW: Cupredoxin / Polyferredoxin

In 2 genomes
OLD: hypothetical protein based on FIGfams
NEW: Copper/silver efflux RND transporter, periplasmic protein CusF

In 1 genome
OLD: hypothetical protein based on unreliable automated assignments
NEW: Copper binding protein, plastocyanin/azurin family

In 1 genome
OLD: hypothetical protein based on unreliable automated assignments
NEW: Glycosyltransferase

In 11 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Cupredoxin

In 1 genome
OLD: hypothetical protein based on unreliable automated assignments
NEW: Heavy-metal-associated domain / Cupredoxin

In 1 genome
OLD: hypothetical protein based on unreliable automated assignments
NEW: RND-type multidrug efflux pump, membrane permease

In 2 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Copper/silver efflux RND transporter, periplasmic protein CusF

In 3 genomes
OLD: membrane protein ykgB
NEW: RclC-like protein

In 11 genomes
OLD: membrane protein ykgB based on FIGfams
NEW: RclC-like protein

In 3 genomes
OLD: membrane protein ykgB based on unreliable automated assignments
NEW: RclC-like protein

In 2 genomes
OLD: putative cation efflux system transmembrane protein based on unreliable automated assignments
NEW: hypothetical protein

In 1 genome
OLD: putative cytochrome P450
NEW: Cytochrome P450 102A3 (EC 1.14.14.1) / NADPH--cytochrome P450 reductase (EC 1.6.2.4)

In 1 genome
OLD: putative cytochrome P450
NEW: Cytochrome P450 102A3 (EC 1.14.14.1) / NADPH--cytochrome P450 reductase (EC 1.6.2.4)

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As of Wed Jun 26 10:10:03 2019, there are 448 jobs in the RAST queue

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PUBSEED GENOMES WEEKLY ANNOTATION ACTIVITY

Genome Name (# Annotations)

Synechocystis sp. PCC 6803 (12)
Polaromonas sp. JS666 (11)
Parvularcula bermudensis HTCC2503 (11)
Acidithiobacillus ferrooxidans ATCC 53993 (11)
Myxococcus xanthus DK 1622 (11)
Anaeromyxobacter dehalogenans 2CP-C (10)
Parvularcula bermudensis HTCC2503 (10)
Rhodobacter sphaeroides 2.4.1 (10)
Cyanobium sp. PCC 7001 (10)
Halothece sp. PCC 7418 (10)
Nostoc sp. PCC 7120 (10)
Nostoc sp. PCC 7120 (10)
Streptococcus canis FSL Z3-227 (9)
Alteromonas macleodii 'Deep ecotype' (9)
Rivularia sp. PCC 7116 (9)
Synechococcus elongatus PCC 7942 (9)
Rhodobacter capsulatus SB1003 (9)
Synechococcus elongatus PCC 7942 (9)
Anaeromyxobacter dehalogenans 2CP-C (9)
Magnetococcus sp. MC-1 (8)
Gillisia limnaea DSM 15749 (8)
Polaribacter irgensii 23-P (8)
Methylobacterium radiotolerans JCM 2831 (8)
Acidovorax sp. JS42 (8)
Pantoea ananatis LMG 20103 (8)
Lactobacillus salivarius ATCC 11741 (8)
Pseudoalteromonas atlantica T6c (8)
Roseobacter sp. MED193 (8)
Eremococcus coleocola ACS-139-V-Col8 (8)
Methanosarcina acetivorans C2A (8)
Sanguibacter keddieii DSM 10542 (8)
Lautropia mirabilis ATCC 51599 (8)
Simiduia agarivorans SA1 = DSM 21679 (8)
Alteromonas macleodii 'Deep ecotype' (8)
Gloeocapsa sp. PCC 7428 (8)
Magnetococcus sp. MC-1 (8)
Pseudoalteromonas atlantica T6c (8)
Sulfitobacter sp. EE-36 (8)
Rhodobacter sphaeroides 2.4.1 (8)
Cyanothece sp. ATCC 51142 (7)
Nostoc punctiforme PCC 73102 (7)
Novispirillum itersonii subsp. itersonii ATCC 12639 (7)
Diaphorobacter sp. TPSY (7)
Polaribacter irgensii 23-P (7)
Congregibacter litoralis KT71 (7)
Ramlibacter tataouinensis TTB310 (7)
Parvularcula bermudensis HTCC2503 (7)
Polaribacter franzmannii ATCC 700399 (7)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (7)
Myxococcus xanthus DZF1 (7)
Acidithiobacillus ferrooxidans ATCC 53993 (7)
Hyphomonas neptunium ATCC 15444 (7)