The Daily SEED


PUBSEED ANNOTATIONS

In 19 genomes
OLD: 1-pyrroline-2-carboxylate reductase (NAD(P)H) (EC 1.5.1.49)
NEW: 1-pyrroline-2-carboxylate reductase (NAD(P)H) (EC 1.5.1.49)

In 1 genome
OLD: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 7 genomes
OLD: 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase (EC 4.1.1.45)
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 18 genomes
OLD: 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase (EC 4.1.1.45)
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 13 genomes
OLD: 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase (EC 4.1.1.45) based on FIGfams
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 8 genomes
OLD: 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase (EC 4.1.1.45) based on unreliable automated assignments
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 1 genome
OLD: 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase( EC:4.1.1.45 ) based on unreliable automated assignments
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 3 genomes
OLD: 2-hydroxyhexa-2,4-dienoate hydratase (EC 4.2.1.132)
NEW: 2-keto-4-pentenoate hydratase (EC 4.2.1.80)

In 251 genomes
OLD: 2-hydroxymuconate tautomerase-like protein
NEW: 2-hydroxymuconate tautomerase-like protein YwhB (Bsu3751)

In 5 genomes
OLD: 2-hydroxymuconate tautomerase-like protein YwhB (Bsu3751)
NEW: 2-hydroxymuconate tautomerase-like protein YwhB (Bsu3751)

In 1 genome
OLD: 2-keto-4-pentenoate hydratase (EC 4.2.1.-) based on unreliable automated assignments
NEW: 2-keto-4-pentenoate hydratase (EC 4.2.1.80)

In 13 genomes
OLD: 2-keto-4-pentenoate hydratase (EC 4.2.1.80)
NEW: Hydratase/decarboxylase

In 3 genomes
OLD: 2-keto-4-pentenoate hydratase (EC 4.2.1.80)
NEW: hypothetical protein

In 1 genome
OLD: 2-keto-4-pentenoate hydratase (EC 4.2.1.80)
NEW: Fumarylacetoacetate hydrolase family protein

In 13 genomes
OLD: 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6)
NEW: 3-hydroxyanthranilate 3,4-dioxygenase-like protein

In 36 genomes
OLD: 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6) based on FIGfams
NEW: 3-hydroxyanthranilate 3,4-dioxygenase-like protein

In 1 genome
OLD: 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6) based on unreliable automated assignments
NEW: 3-hydroxyanthranilate 3,4-dioxygenase-like protein

In 67 genomes
OLD: 3-hydroxyanthranilate 3,4-dioxygenase-like protein
NEW: 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6)

In 6 genomes
OLD: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
NEW: Dimethylmaleate hydratase, large subunit (EC 4.2.1.85)

In 4 genomes
OLD: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
NEW: Dimethylmaleate hydratase, small subunit (EC 4.2.1.85)

In 2 genomes
OLD: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)
NEW: 4-hydroxy-2-ketovalerate aldolase-like protein

In 1 genome
OLD: 4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.14.9)
NEW: Anthranilate 3-monooxygenase (FAD) (EC 1.14.14.8)

In 1 genome
OLD: 4-oxalocrotonate decarboxylase (EC 4.1.1.77)
NEW: Hydratase/decarboxylase

In 2 genomes
OLD: 4-oxalocrotonate decarboxylase (EC 4.1.1.77)
NEW: 2-keto-4-pentenoate hydratase (EC 4.2.1.80)

In 2 genomes
OLD: 4-oxalocrotonate decarboxylase (EC 4.1.1.77) based on unreliable automated assignments
NEW: 2-keto-4-pentenoate hydratase (EC 4.2.1.80)

In 1 genome
OLD: 4-oxalocrotonate decarboxylase( EC:4.1.1.77 )
NEW: Hydratase/decarboxylase

In 2 genomes
OLD: 4-oxalocrotonate decarboxylase( EC:4.1.1.77 ) based on unreliable automated assignments
NEW: Hydratase/decarboxylase

In 2 genomes
OLD: 6-carboxytetrahydropterin synthase (EC 4.1.2.50) # unusual variant
NEW: 6-carboxytetrahydropterin synthase (EC 4.1.2.50)

In 6 genomes
OLD: 6-carboxytetrahydropterin synthase (EC 4.1.2.50) / Folate biosynthesis protein PTPS-III, catalyzes a reaction that bypasses dihydroneopterin aldolase (FolB)
NEW: 6-carboxytetrahydropterin synthase (EC 4.1.2.50)

In 2 genomes
OLD: Aldehyde dehydrogenase-like protein
NEW: Aldehyde dehydrogenase (NAD(+)) (EC 1.2.1.3)

In 1 genome
OLD: Aminocarboxymuconate-semialdehyde decarboxylase precursor (EC 4.1.1.45)
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 1 genome
OLD: Aminocarboxymuconate-semialdehyde decarboxylase precursor (EC 4.1.1.45) based on unreliable automated assignments
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 3 genomes
OLD: Aminocarboxymuconate-semialdehyde decarboxylase( EC:4.1.1.45 ) based on unreliable automated assignments
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 2 genomes
OLD: Anthranilate 3-monooxygenase (EC 1.14.14.8) @ 4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.14.9)
NEW: Anthranilate 3-monooxygenase (FAD) (EC 1.14.14.8)

In 1 genome
OLD: COG1662: Transposase and inactivated derivatives, IS1 family
NEW: Dihydromonapterin reductase (EC 1.5.1.50)

In 40 genomes
OLD: Cytochrome bo(3) ubiquinol oxidase subunit 1 (EC 1.10.3.10)
NEW: Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)

In 268 genomes
OLD: Cytochrome bo(3) ubiquinol oxidase subunit 2
NEW: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)

In 202 genomes
OLD: Cytochrome bo(3) ubiquinol oxidase subunit 3
NEW: Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)

In 291 genomes
OLD: Cytochrome bo(3) ubiquinol oxidase subunit 4
NEW: Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)

In 2 genomes
OLD: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
NEW: hypothetical protein

In 2 genomes
OLD: Cytochrome c oxidase polypeptide II (EC 1.9.3.1) based on FIGfams
NEW: hypothetical protein

In 1 genome
OLD: Cytochrome c oxidase polypeptide II (EC 1.9.3.1) based on unreliable automated assignments
NEW: hypothetical protein

In 34 genomes
OLD: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
NEW: hypothetical protein

In 2 genomes
OLD: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
NEW: hypothetical protein

In 2 genomes
OLD: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) based on FIGfams
NEW: hypothetical protein

In 2 genomes
OLD: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) based on unreliable automated assignments
NEW: hypothetical protein

In 4 genomes
OLD: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
NEW: FIG00465314: hypothetical protein

In 20 genomes
OLD: Cytochrome d ubiquinol oxidase subunit I
NEW: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)

In 36 genomes
OLD: Cytochrome d ubiquinol oxidase subunit II
NEW: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)

In 2 genomes
OLD: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) based on FIGfams
NEW: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)

In 2 genomes
OLD: DNA for 3-methylaspartate ammonia-lyase, glutamate mutase
NEW: Acyclic terpene utilisation, AtuA family

In 20 genomes
OLD: DNA for 3-methylaspartate ammonia-lyase, glutamate mutase
NEW: Acyclic terpene utilisation, AtuA family

In 35 genomes
OLD: DNA for 3-methylaspartate ammonia-lyase, glutamate mutase based on FIGfams
NEW: Acyclic terpene utilisation, AtuA family

In 21 genomes
OLD: DNA for 3-methylaspartate ammonia-lyase, glutamate mutase based on unreliable automated assignments
NEW: Acyclic terpene utilisation, AtuA family

In 1 genome
OLD: Delta 1-piperideine-2-carboxylate reductase (NAD(P)H) (EC 1.5.1.1) @ Delta 1-pyrroline-2-carboxylate reductase (NAD(P)H) (EC 1.5.1.1)
NEW: 1-pyrroline-2-carboxylate reductase (NAD(P)H) (EC 1.5.1.49)

In 374 genomes
OLD: Delta 1-pyrroline-2-carboxylate reductase (NAD(P)H) (EC 1.5.1.49)
NEW: 1-pyrroline-2-carboxylate reductase (NAD(P)H) (EC 1.5.1.49)

In 1 genome
OLD: Dihydrofolate reductase
NEW: Dihydromethanopterin reductase (EC 1.5.1.47)

In 2 genomes
OLD: Dihydrofolate reductase
NEW: Dihydromethanopterin reductase (EC 1.5.1.47)

In 6 genomes
OLD: Dihydrofolate reductase-like protein
NEW: Dihydromethanopterin reductase (EC 1.5.1.47)

In 1 genome
OLD: Dihydroneopterin aldolase (EC 4.1.2.25) based on unreliable automated assignments
NEW: Dihydroneopterin aldolase (EC 4.1.2.25) @ 7,8-dihydroneopterin epimerase (EC 5.1.99.8)

In 1 genome
OLD: Enoyl-CoA hydratase/isomerase
NEW: Enoyl-CoA hydratase (EC 4.2.1.17)

In 2 genomes
OLD: FIG00535713: hypothetical protein
NEW: 6-carboxytetrahydropterin synthase (EC 4.1.2.50)

In 1 genome
OLD: FIG00638931: hypothetical protein
NEW: hypothetical protein

In 1 genome
OLD: FIG00823707: hypothetical protein
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 1 genome
OLD: FIG00883563: hypothetical protein
NEW: hypothetical protein

In 65 genomes
OLD: FIG00984811: hypothetical protein
NEW: hypothetical protein

In 2 genomes
OLD: FIG00984811: hypothetical protein
NEW: hypothetical protein

In 54 genomes
OLD: FIG01108025: hypothetical protein
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 1 genome
OLD: FIG01108025: hypothetical protein based on FIGfams
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 2 genomes
OLD: FMN adenylyltransferase (EC 2.7.7.2) / Riboflavin kinase (EC 2.7.1.26)
NEW: FMN adenylyltransferase (EC 2.7.7.2) # There is no Riboflavin kinase domain

In 13 genomes
OLD: FolM Alternative dihydrofolate reductase 1
NEW: Dihydromonapterin reductase (EC 1.5.1.50)

In 176 genomes
OLD: FolM Alternative dihydrofolate reductase 1
NEW: Dihydromonapterin reductase (EC 1.5.1.50)

In 294 genomes
OLD: FolM Alternative dihydrofolate reductase 1 based on FIGfams
NEW: Dihydromonapterin reductase (EC 1.5.1.50)

In 19 genomes
OLD: FolM Alternative dihydrofolate reductase 1 based on unreliable automated assignments
NEW: Dihydromonapterin reductase (EC 1.5.1.50)

In 1 genome
OLD: Folate biosynthesis protein PTPS-III, catalyzes a reaction that bypasses dihydroneopterin aldolase (FolB)
NEW: 6-carboxytetrahydropterin synthase (EC 4.1.2.50)

In 1 genome
OLD: Formylmethanofuran dehydrogenase subunit C (EC 1.2.99.5)
NEW: Formylmethanofuran dehydrogenase subunit C (EC 1.2.7.12)

In 1 genome
OLD: Formylmethanofuran dehydrogenase subunit C (EC 1.2.99.5) based on FIGfams
NEW: Formylmethanofuran dehydrogenase subunit C (EC 1.2.7.12)

In 1 genome
OLD: Hep_Hag family protein/haemagluttinin motif family protein/YadA-like domain protein
NEW: FIG00465314: hypothetical protein

In 2 genomes
OLD: Hydratase/decarboxylase
NEW: 2-keto-4-pentenoate hydratase (EC 4.2.1.80)

In 2 genomes
OLD: Immune-responsive protein 1
NEW: MmgE/PrpD family protein

In 1 genome
OLD: Immune-responsive protein 1
NEW: MmgE/PrpD family protein

In 7 genomes
OLD: Isocitrate lyase (EC 4.1.3.1)
NEW: 2,3-dimethylmalate lyase (EC 4.1.3.32)

In 18 genomes
OLD: Isocitrate lyase (EC 4.1.3.1)
NEW: 2,3-dimethylmalate lyase (EC 4.1.3.32)

In 1 genome
OLD: Methylaspartate mutase, S subunit (EC 5.4.99.1)
NEW: Methylaspartate mutase, S subunit (EC 5.4.99.1)

In 1 genome
OLD: Methylene tetrahydromethanopterin dehydrogenase (EC 1.5.99.9)
NEW: Methylene tetrahydromethanopterin dehydrogenase (EC 1.5.98.1)

In 1 genome
OLD: Methylene tetrahydromethanopterin dehydrogenase (EC 1.5.99.9) based on unreliable automated assignments
NEW: Methylene tetrahydromethanopterin dehydrogenase (EC 1.5.98.1)

In 1 genome
OLD: N-((2S)-2-amino-2-carboxyethyl)-L-glutamate dehydrogenase (EC 1.5.1.51)
NEW: Ornithine cyclodeaminase-like protein

In 3 genomes
OLD: N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)
NEW: Internalin-like/N-acetylmuramoyl-L-alanine amidase

In 1 genome
OLD: N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)
NEW: Internalin-like/N-acetylmuramoyl-L-alanine amidase

In 4 genomes
OLD: N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) based on FIGfams
NEW: Internalin-like/N-acetylmuramoyl-L-alanine amidase

In 2 genomes
OLD: N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) based on unreliable automated assignments
NEW: Internalin-like/N-acetylmuramoyl-L-alanine amidase

In 2 genomes
OLD: NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13)
NEW: 6-carboxytetrahydropterin synthase (EC 4.1.2.50)

In 2 genomes
OLD: NADPH-dependent FMN reductase family protein
NEW: FAD reductase (NAD(P)H) (EC 1.5.1.45)

In 1 genome
OLD: Nicotinate dehydrogenase, FAD-binding subunit (EC 1.17.1.5) # carboxy-end
NEW: Nicotinate dehydrogenase, FAD-binding subunit (EC 1.17.1.5) # fragment

In 68 genomes
OLD: None
NEW: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)

In 2 genomes
OLD: None
NEW: N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)

In 1 genome
OLD: None
NEW: Internalin-like/N-acetylmuramoyl-L-alanine amidase

In 32 genomes
OLD: None
NEW: Transcriptional regulator, Xre family

In 2 genomes
OLD: None
NEW: Dimethylmaleate hydratase, large subunit (EC 4.2.1.85)

In 1 genome
OLD: None
NEW: Uncharacterized protein SMc03941

In 245 genomes
OLD: None
NEW: N-((2S)-2-amino-2-carboxyethyl)-L-glutamate dehydrogenase (EC 1.5.1.51)

In 4 genomes
OLD: None
NEW: FIG00465314: hypothetical protein

In 1 genome
OLD: None
NEW: Hydratase/decarboxylase

In 90 genomes
OLD: None
NEW: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)

In 445 genomes
OLD: None
NEW: Dihydromonapterin reductase (EC 1.5.1.50)

In 148 genomes
OLD: None
NEW: Acyclic terpene utilisation, AtuA family

In 1 genome
OLD: None
NEW: MmgE/PrpD family protein

In 276 genomes
OLD: None
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 1 genome
OLD: None
NEW: Protein GlmL, hydantoinase/oxoprolinase family

In 286 genomes
OLD: None
NEW: hypothetical protein

In 1 genome
OLD: None
NEW: Two-component transcriptional response regulator, AtoC family

In 17 genomes
OLD: None
NEW: 3-hydroxyanthranilate 3,4-dioxygenase-like protein

In 5 genomes
OLD: Ornithine cyclodeaminase (EC 4.3.1.12) / Siderophore staphylobactin biosynthesis protein SbnB
NEW: N-((2S)-2-amino-2-carboxyethyl)-L-glutamate dehydrogenase (EC 1.5.1.51)

In 5 genomes
OLD: Ornithine cyclodeaminase (EC 4.3.1.12) / Siderophore staphylobactin biosynthesis protein SbnB
NEW: N-((2S)-2-amino-2-carboxyethyl)-L-glutamate dehydrogenase (EC 1.5.1.51)

In 48 genomes
OLD: Ornithine cyclodeaminase (EC 4.3.1.12) / Siderophore staphylobactin biosynthesis protein SbnB based on FIGfams
NEW: N-((2S)-2-amino-2-carboxyethyl)-L-glutamate dehydrogenase (EC 1.5.1.51)

In 2 genomes
OLD: PMI2575 like protein
NEW: FIG00465314: hypothetical protein

In 1 genome
OLD: Predicted transcriptional regulator
NEW: Transcriptional regulator, Xre family

In 2 genomes
OLD: Probable reactivating factor for an aminomutase or amino-lyase
NEW: Protein GlmL, hydantoinase/oxoprolinase family

In 4 genomes
OLD: Proline dehydrogenase (EC 1.5.5.2) / L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88)
NEW: Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.5.2) / L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88)

In 1 genome
OLD: Putative inner membrane protein
NEW: FIG00465314: hypothetical protein

In 22 genomes
OLD: Transcriptional regulator
NEW: Transcriptional regulator, Xre family

In 6 genomes
OLD: Transcriptional regulator
NEW: Transcriptional regulator, Xre family

In 2 genomes
OLD: Transcriptional regulator PA2681, LysR family
NEW: Transcriptional regulator, LysR family

In 1 genome
OLD: Transcriptional regulator STM2803, MocR family
NEW: Pyridoxine biosynthesis transcriptional regulator PdxR, MocR family / Pyridoxamine phosphate aminotransferase (EC 2.6.1.54)

In 6 genomes
OLD: Transcriptional regulator based on FIGfams
NEW: Transcriptional regulator, Xre family

In 1 genome
OLD: Transcriptional regulator, FadR family
NEW: Transcriptional regulator, HutC family

In 1 genome
OLD: Two-component transcriptional response regulator, AtoC family
NEW: Two-component transcriptional response regulator, AtoC family # fragment

In 239 genomes
OLD: Uncharacterized protein GlmL
NEW: Protein GlmL, hydantoinase/oxoprolinase family

In 9 genomes
OLD: Ureidoglycolate/malate/sulfolactate dehydrogenase family
NEW: 1-pyrroline-2-carboxylate reductase (NAD(P)H) (EC 1.5.1.49)

In 1 genome
OLD: amidohydrolase 2
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 1 genome
OLD: amidohydrolase 2
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 11 genomes
OLD: amidohydrolase 2 based on unreliable automated assignments
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 1 genome
OLD: beta-ribofuranosylaminobenzene 5'-phosphate synthase based on FIGfams
NEW: beta-ribofuranosylaminobenzene 5'-phosphate synthase (EC 2.4.2.54)

In 1 genome
OLD: hydratase
NEW: Hydratase/decarboxylase

In 13 genomes
OLD: hypothetical protein
NEW: Hydratase/decarboxylase

In 1 genome
OLD: hypothetical protein
NEW: Internalin-like/N-acetylmuramoyl-L-alanine amidase

In 1 genome
OLD: hypothetical protein
NEW: Acyclic terpene utilisation, AtuA family

In 5 genomes
OLD: hypothetical protein
NEW: BUG/TctC family periplasmic protein

In 36 genomes
OLD: hypothetical protein
NEW: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)

In 3 genomes
OLD: hypothetical protein
NEW: Glutamate synthase [NADPH] putative GlxC chain (EC 1.4.1.13)

In 15 genomes
OLD: hypothetical protein
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 1 genome
OLD: hypothetical protein
NEW: Hydratase/decarboxylase

In 1 genome
OLD: hypothetical protein
NEW: Dihydromonapterin reductase (EC 1.5.1.50)

In 1 genome
OLD: hypothetical protein
NEW: Methyl-accepting chemotaxis protein

In 1 genome
OLD: hypothetical protein
NEW: Internalin-like/N-acetylmuramoyl-L-alanine amidase

In 1 genome
OLD: hypothetical protein
NEW: Acyclic terpene utilisation, AtuA family

In 1 genome
OLD: hypothetical protein
NEW: AsmA family protein

In 1 genome
OLD: hypothetical protein
NEW: Phytochrome, two-component sensor histidine kinase (EC 2.7.13.3)

In 1 genome
OLD: hypothetical protein
NEW: Transcriptional regulator, HutC family

In 5 genomes
OLD: hypothetical protein
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 3 genomes
OLD: hypothetical protein
NEW: FIG00465314: hypothetical protein

In 1 genome
OLD: hypothetical protein based on unreliable automated assignments
NEW: Internalin-like/N-acetylmuramoyl-L-alanine amidase

In 1 genome
OLD: hypothetical protein based on unreliable automated assignments
NEW: Dihydromethanopterin reductase (EC 1.5.1.47)

In 7 genomes
OLD: hypothetical protein based on unreliable automated assignments
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 1 genome
OLD: identified by similarity to OMNI:PIN0532 from original annotations
NEW: Acyclic terpene utilisation, AtuA family

In 1 genome
OLD: metal-dependent hydrolase (putative)
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 1 genome
OLD: metal-dependent hydrolase (putative) based on unreliable automated assignments
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 1 genome
OLD: putative Cytochrome bd2, subunit II
NEW: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)

In 1 genome
OLD: putative Cytochrome bd2, subunit II
NEW: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)

In 2 genomes
OLD: putative amidohydrolase/decarboxylase based on unreliable automated assignments
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 1 genome
OLD: putative autotransport adhesin( EC:3.4.- )
NEW: FIG00465314: hypothetical protein

In 5 genomes
OLD: putative hydratase
NEW: Hydratase/decarboxylase

In 15 genomes
OLD: putative hydratase
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 1 genome
OLD: putative hydratase based on FIGfams
NEW: Aminocarboxymuconate-semialdehyde decarboxylase-like protein

In 1 genome
OLD: putative hydratase protein based on unreliable automated assignments
NEW: Hydratase/decarboxylase

In 1 genome
OLD: putative isocitrate lyase-family enzyme
NEW: 2,3-dimethylmalate lyase (EC 4.1.3.32)

In 1 genome
OLD: putative isocitrate lyase-family enzyme based on unreliable automated assignments
NEW: 2,3-dimethylmalate lyase (EC 4.1.3.32)

In 1 genome
OLD: putative ornithine cyclodeaminase( EC:4.3.1.12 ) based on unreliable automated assignments
NEW: Ornithine cyclodeaminase-like protein

In 1 genome
OLD: sigma-54-dependent transcriptional regulator
NEW: Two-component transcriptional response regulator, AtoC family

RAST NEWS

(RAST Citations)


As of Sat Apr 20 21:10:03 2019, there are 17 jobs in the RAST queue

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PUBSEED GENOMES WEEKLY ANNOTATION ACTIVITY

Genome Name (# Annotations)

Rhodococcus jostii RHA1 (36)
Rhodococcus jostii RHA1 (35)
Brevibacillus brevis NBRC 100599 (35)
Sphingomonas wittichii RW1 (32)
Desulfobacula toluolica Tol2 (31)
Burkholderia xenovorans LB400 (31)
Pirellula sp. 1 (31)
Bacillus megaterium DSM319 (30)
Ralstonia eutropha JMP134 (27)
Staphylococcus aureus subsp. aureus CIG1242 (25)
Bradyrhizobium sp. BTAi1 (25)
Amycolatopsis mediterranei U32 (24)
Novosphingobium sp. PP1Y (24)
Ruegeria pomeroyi DSS-3 (24)
Staphylococcus aureus subsp. aureus CIG1233 (24)
Staphylococcus aureus subsp. aureus VRS8 (24)
Rhodopirellula baltica SH 1 (24)
Staphylococcus aureus subsp. aureus VRS7 (24)
Staphylococcus aureus M0946 (24)
Staphylococcus aureus subsp. aureus Mu50 (23)
Staphylococcus aureus M0066 (23)
Staphylococcus aureus M0154 (23)
Staphylococcus aureus M1037 (23)
Staphylococcus aureus M0213 (23)
Staphylococcus aureus A5937 (23)
Staphylococcus aureus subsp. aureus CIG1214 (23)
Staphylococcus aureus subsp. aureus CIG1165 (23)
Staphylococcus aureus M0374 (23)
Staphylococcus aureus M1450 (23)
Staphylococcus aureus subsp. aureus CGS03 (23)
Staphylococcus aureus subsp. aureus Mu50-omega (23)
Staphylococcus aureus subsp. aureus CIG1213 (23)
Staphylococcus aureus subsp. aureus Mu50 (23)
Staphylococcus aureus subsp. aureus VRS9 (23)
Staphylococcus aureus M1321 (23)
Staphylococcus aureus A9763 (23)
Staphylococcus aureus M1320 (23)
Staphylococcus aureus A8115 (23)
Staphylococcus aureus subsp. aureus ECT-R 2 (23)
Staphylococcus aureus subsp. aureus N315 (23)
Staphylococcus aureus M1198 (23)
Staphylococcus aureus M0822 (23)
Staphylococcus aureus M0900 (23)
Staphylococcus aureus subsp. aureus H29 (23)
Staphylococcus aureus M0404 (23)
Staphylococcus aureus M1093 (23)
Staphylococcus aureus M0628 (23)
Staphylococcus aureus M1405 (23)
Staphylococcus aureus M1036 (23)
Staphylococcus aureus M0964 (23)
Staphylococcus aureus subsp. aureus VRS10 (23)
Staphylococcus aureus M0494 (23)