The Daily SEED

In 3 genomesOLD: Anti-sigma B factor antagonist RsbV NEW: Anti-sigma factor antagonist BldG ## regulates morphogenesis and antibiotic production In 1 genome OLD: Anti-sigma-factor antagonist NEW: Anti-sigma factor antagonist BldG ## regulates morphogenesis and antibiotic production In 1 genome OLD: COG0006: Xaa-Pro aminopeptidase NEW: TonB-dependent receptor In 1 genome OLD: COG1609: Transcriptional regulators NEW: TonB-dependent receptor In 1 genome OLD: COG1939: Ribonuclease III family protein based on FIGfams NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III ## 23S rRNA maturase In 19 genomes OLD: Chromosome (plasmid) partitioning protein ParA NEW: Chromosome (plasmid) partitioning protein ParA @ F plasmid partitioning protein SopA In 1 genome OLD: Chromosome (plasmid) partitioning protein ParA based on FIGfams NEW: Chromosome (plasmid) partitioning protein ParA @ F plasmid partitioning protein SopA # fragment In 32 genomes OLD: Chromosome (plasmid) partitioning protein ParA based on FIGfams NEW: Chromosome (plasmid) partitioning protein ParA @ F plasmid partitioning protein SopA In 1 genome OLD: Chromosome (plasmid) partitioning protein ParA based on unreliable automated assignments NEW: Chromosome (plasmid) partitioning protein ParA @ F plasmid partitioning protein SopA # fragment In 18 genomes OLD: Chromosome (plasmid) partitioning protein ParB NEW: Chromosome (plasmid) partitioning protein ParB @ F plasmid partitioning protein SopB In 47 genomes OLD: Chromosome (plasmid) partitioning protein ParB based on FIGfams NEW: Chromosome (plasmid) partitioning protein ParB @ F plasmid partitioning protein SopB In 221 genomes OLD: Colicin I receptor NEW: TonB-dependent receptor In 1 genome OLD: Cysteinyl-tRNA synthetase (EC 6.1.1.16) / Mini-ribonuclease III NEW: Cysteinyl-tRNA synthetase (EC 6.1.1.16) / LSU rRNA maturation endonuclease Mini-ribonuclease III In 1 genome OLD: Cytidine deaminase (EC 3.5.4.5) NEW: Cytidine deaminase (EC 3.5.4.5) #fraction In 1 genome OLD: Cytidine deaminase (EC 3.5.4.5) NEW: Cytidine deaminase (EC 3.5.4.5) fragment In 1 genome OLD: Cytidine deaminase (EC 3.5.4.5) #fraction NEW: Cytidine deaminase (EC 3.5.4.5) fragment In 28 genomes OLD: Cytidine deaminase (EC 3.5.4.5) based on FIGfams NEW: Cytidine deaminase (EC 3.5.4.5) #E. faecium-like In 1 genome OLD: FIG00684662: hypothetical protein NEW: TonB-dependent receptor In 1 genome OLD: Ferrichrome-iron receptor based on unreliable automated assignments NEW: TonB-dependent receptor In 1 genome OLD: FyuA precursor NEW: TonB-dependent receptor In 157 genomes OLD: LSU rRNA maturation endonuclease Mini-ribonuclease III NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III ## 23S rRNA maturase In 1758 genomes OLD: LSU rRNA maturation endonuclease Mini-ribonuclease III ## 23S rRNA maturase NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III In 8 genomes OLD: LSU rRNA maturation endonuclease Mini-ribonuclease III ## 23S rRNA maturase NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III ## 23S rRNA maturase In 2 genomes OLD: Mini-ribonuclease III NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III In 1225 genomes OLD: Mini-ribonuclease III ## 23S rRNA maturase NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III ## 23S rRNA maturase In 304 genomes OLD: None NEW: Chromosome (plasmid) partitioning protein ParB @ F plasmid partitioning protein SopB In 1 genome OLD: None NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III In 1 genome OLD: None NEW: Protein IcfG In 102 genomes OLD: None NEW: TonB-dependent receptor In 311 genomes OLD: None NEW: Chromosome (plasmid) partitioning protein ParA @ F plasmid partitioning protein SopA In 9 genomes OLD: None NEW: Phosphoserine phosphatase RsbP ## under stress, dephosphorylates RsbV In 242 genomes OLD: None NEW: Cytidine deaminase (EC 3.5.4.5) #E. faecium-like In 2 genomes OLD: None NEW: Phosphoserine phosphatase PA0172 In 531 genomes OLD: None NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III ## 23S rRNA maturase In 1 genome OLD: Outer membrane heme receptor NEW: TonB-dependent receptor In 4 genomes OLD: Outer membrane protein NEW: TonB-dependent receptor In 2 genomes OLD: Outer membrane protein NEW: TonB-dependent receptor In 1 genome OLD: Outer membrane protein based on unreliable automated assignments NEW: TonB-dependent receptor In 8 genomes OLD: Outer membrane receptor protein NEW: TonB-dependent receptor In 1 genome OLD: Outer membrane receptor proteins, mostly Fe transport NEW: TonB-dependent receptor In 2 genomes OLD: Outer membrane vitamin B12 receptor BtuB NEW: TonB-dependent receptor In 4 genomes OLD: Outer membrane vitamin B12 receptor BtuB NEW: TonB-dependent receptor In 1 genome OLD: Outer membrane vitamin B12 receptor BtuB based on FIGfams NEW: TonB-dependent receptor In 5 genomes OLD: Putative TonB-dependent receptor NEW: TonB-dependent receptor In 3 genomes OLD: Putative outer membrane receptor NEW: TonB-dependent receptor In 18 genomes OLD: Putative outer membrane receptor based on FIGfams NEW: TonB-dependent receptor In 4 genomes OLD: RNA polymerase sporulation-specific sigma factor SigH NEW: SigH-like RNA polymerase sigma factor In 1 genome OLD: Serine phosphatase RsbU from original annotations NEW: Phosphoserine phosphatase PA0172 In 1 genome OLD: Serine phosphatase RsbU, regulator of sigma subunit NEW: Phosphoserine phosphatase PA0172 In 4 genomes OLD: Serine phosphatase RsbU, regulator of sigma subunit NEW: Protein IcfG In 1 genome OLD: Serine phosphatase RsbU, regulator of sigma subunit NEW: Phosphoserine phosphatase RsbP ## under stress, dephosphorylates RsbV In 9 genomes OLD: Serine phosphatase RsbU, regulator of sigma subunit NEW: Phosphoserine phosphatase PA0172 In 5 genomes OLD: Serine phosphatase RsbU, regulator of sigma subunit based on FIGfams NEW: Phosphoserine phosphatase RsbP ## under stress, dephosphorylates RsbV In 2 genomes OLD: Serine phosphatase RsbU, regulator of sigma subunit based on FIGfams NEW: Phosphoserine phosphatase PA0172 In 1 genome OLD: Serine phosphatase RsbU, regulator of sigma subunit based on unreliable automated assignments NEW: Protein IcfG In 6 genomes OLD: Serine phosphatase RsbU, regulator of sigma subunit based on unreliable automated assignments NEW: Phosphoserine phosphatase PA0172 In 1 genome OLD: Small protein similar to cysteinyl-tRNA synthetase NEW: LSU rRNA maturation endonuclease Mini-ribonuclease III ## 23S rRNA maturase In 2 genomes OLD: TonB family protein based on unreliable automated assignments NEW: Putative TonB-dependent receptor In 1 genome OLD: TonB-Dependent Hemoglobin Receptor HmuR NEW: TonB-dependent receptor In 2 genomes OLD: TonB-ExbBD energy transducing system, ExbB subunit NEW: MotA/TolQ/ExbB proton channel family protein In 2 genomes OLD: TonB-ExbBD energy transducing system, ExbD subunit NEW: Biopolymer transport protein ExbD/TolR In 1 genome OLD: TonB-dependent hemin , ferrichrome receptor NEW: TonB-dependent receptor In 1 genome OLD: TonB-dependent outer membrane receptor NEW: TonB-dependent receptor In 3 genomes OLD: TonB-dependent outer membrane receptor NEW: TonB-dependent receptor In 1 genome OLD: TonB-dependent outer membrane receptor based on FIGfams NEW: TonB-dependent receptor In 1 genome OLD: TonB-dependent outer membrane receptor based on unreliable automated assignments NEW: TonB-dependent receptor In 2 genomes OLD: TonB-dependent receptor, plug based on unreliable automated assignments NEW: TonB-dependent receptor In 6 genomes OLD: TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins NEW: TonB-dependent receptor In 1 genome OLD: TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins based on unreliable automated assignments NEW: TonB-dependent receptor In 1 genome OLD: TonB-dependent siderophore receptor NEW: TonB-dependent receptor In 1 genome OLD: colicin I receptor precursor NEW: TonB-dependent receptor In 1 genome OLD: colicin I receptor precursor based on unreliable automated assignments NEW: TonB-dependent receptor In 2 genomes OLD: ferric siderophore receptor, putative, TonB receptor family NEW: TonB-dependent receptor In 1 genome OLD: hypothetical protein NEW: Anti-sigma factor antagonist BldG ## regulates morphogenesis and antibiotic production In 1 genome OLD: hypothetical protein NEW: Serine phosphatase RsbU, regulator of sigma subunit In 11 genomes OLD: hypothetical protein NEW: TonB-dependent receptor In 1 genome OLD: hypothetical protein NEW: Stage II sporulation serine phosphatase for sigma-F activation (SpoIIE) In 1 genome OLD: hypothetical protein NEW: MotA/TolQ/ExbB proton channel family protein In 8 genomes OLD: hypothetical protein NEW: TonB-dependent receptor In 1 genome OLD: hypothetical protein NEW: Phosphoserine phosphatase PA0172 In 1 genome OLD: hypothetical protein based on FIGfams NEW: Stage II sporulation serine phosphatase for sigma-F activation (SpoIIE) In 1 genome OLD: hypothetical protein based on FIGfams NEW: TPR domain protein In 1 genome OLD: hypothetical protein based on unreliable automated assignments NEW: TonB-dependent receptor In 1 genome OLD: outer membrane B12 receptor based on unreliable automated assignments NEW: TonB-dependent receptor In 1 genome OLD: possible tonB-dependent receptor precursor based on unreliable automated assignments NEW: TonB-dependent receptor In 1 genome OLD: probable TonB-dependent receptor NEW: TonB-dependent receptor In 12 genomes OLD: probable TonB-dependent receptor based on FIGfams NEW: TonB-dependent receptor In 1 genome OLD: putative outer membrane receptor protein based on unreliable automated assignments NEW: TonB-dependent receptor In 1 genome OLD: putative serine phosphatase based on unreliable automated assignments NEW: Phosphoserine phosphatase PA0172 In 1 genome OLD: receptor precursor-mostly Fe transport based on unreliable automated assignments NEW: TonB-dependent receptor In 2 genomes OLD: receptor, putative based on unreliable automated assignments NEW: TonB-dependent receptor In 1 genome OLD: serine phosphatase based on unreliable automated assignments NEW: Stage II sporulation serine phosphatase for sigma-F activation (SpoIIE) In 1 genome OLD: tetratricopeptide repeat family protein based on unreliable automated assignments NEW: TPR domain protein In 1 genome OLD: vitamin B12 receptor precursor NEW: TonB-dependent receptor In 1 genome OLD: vitamin B12 receptor precursor based on unreliable automated assignments NEW: TonB-dependent receptor

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