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A collection of examples illustrating the power of the subsystems-based approach and insights that can be gained by its application are available at this location.
ABC_transporter_alkylphosphonate_(TC_3.A.1.9.1)
ABC_transporter_arabinose_(TC_3.A.1.2.2)
ABC_transporter_branched-chain_amino_acid_(TC_3.A.1.4.1)
ABC_transporter_dipeptide_(TC_3.A.1.5.2)
ABC_transporter_ferric_enterobactin_(TC_3.A.1.14.2)
ABC_transporter_ferrichrome_(TC_3.A.1.14.3)
ABC_transporter_galactose_(TC_3.A.1.2.3)
ABC_transporter_glutamate_aspartate_(TC_3.A.1.3.4)
ABC_transporter_glutamine_(TC_3.A.1.3.2)
ABC_transporter_glycerol_(TC_3.A.1.1.3)
ABC_transporter_heme_(TC3.A.1.107.1)
ABC_transporter_histidine_lysine_arginine_ornithine_(TC_3.A.1.3.1)
ABC_transporter_iron(III)_dicitrate_(TC_3.A.1.14.1)
ABC_transporter_L-proline_glycine_betaine_(TC_3.A.1.12.1)
ABC_transporter_macrolide
ABC_transporter_maltose
ABC_transporter_molybdenum_(TC_3.A.1.8.1)
ABC_transporter_nickel_(TC_3.A.1.5.3)
ABC_transporter_oligopeptide_(TC_3.A.1.5.1)
ABC_transporter_peptide_(TC_3.A.1.5.5)
ABC_transporter_phosphate_(TC_3.A.1.7.1)
ABC_transporter_polyamine_putrescine_spermidine_(TC_3.A.1.11.1)
ABC_transporter_putrescine_(TC_3.A.1.11.2)
ABC_transporter_ribose_(TC_3.A.1.2.1)
Adhesion_to_eukaryotic_cell
Alanine_Biosynthesis
Allantoin_degradation
Ammonia_assimilation
Anaerobic_respiratory_reductases
Arginine_Biosynthesis
Arginine_Putrescine_and_4-aminobutyrate_degradation
Asp-Glu-tRNA(Asn-Gln)_transamidation
Bacterial_Cell_Division
Betaine_biosynthesis
Bilin_Biosynthesis
Biotin_biosynthesis
Branched-Chain_Amino_Acid_Biosynthesis
Calvin-Benson_cycle
carnitine_metabolism
Carotenoids
Chlorophyll_Biosynthesis
Chorismate_Synthesis
CMP-N-acetylneuraminate_Biosynthesis
Coenzyme_A_Biosynthesis
Cyanobacterial_Circadian_Clock
Cyanobacterial_CO2_uptake
Cyanophycin_metabolism
cysteine_biosynthesis
Cytochrome_B6-F_complex
Cytolethal_distending_toxin_of_Campylobacter_jejuni
D-arabinose_degradation
D-galactarate_degradation
D-galacturonate_degradation
De_Novo_Purine_Biosynthesis
De_Novo_Pyrimidine_Synthesis
Denitrification
DNA-replication
DNA_Repair_Base_Excision
dTDP-rhamnose_synthesis
Embden-Meyerhof_and_Gluconeogenesis
F0F1-type_ATP_synthase
Fatty_Acid_Biosynthesis_FASII
fatty_acid_metabolism
fatty_acid_oxidation_pathway
Fe-S_cluster_assembly
Flagellum
FMN_and_FAD_biosynthesis
Folate_Biosynthesis
Fucose_and_rhamnose_degradation
Galactitol_degradation
Galactose_degradation
General_secretory_pathway_(Sec-SRP)_complex_(TC_3.A.5.1.1)
Glutamate,_aspartate_and_asparagine_biosynthisis
Glutamate_biosynthesis
Glutathione_Redox_Metabolism
Glycerol_Metabolism
Glycerolipid_and_glycerphospholipid_metabolism
Glycine_synthesis
glyoxylate_degradation
Glyoxylate_Synthesis
GroEL_GroES
Hexitol_degradation
Histidine_Biosynthesis
Histidine_Degradation
HMG_CoA_Synthesis
Inorganic_Sulfur_Assimilation
Inositol_catabolism
Isoprenoid_Biosynthesis
Ketogluconate_metabolism
L-ascorbate_degradation
Lactose_degradation
Leucine_Degradation_and_HMG-CoA_Metabolism
Lysine_Biosynthesis_DAP_Pathway
Mannose-sensitive_hemagglutinin_type_4_pilus
Mannose_and_fructose_metabolism
mannose_and_GDP-mannose_metabolism
Menaquinone_and_Phylloquinone_Biosynthesis
Methanogenesis
Methionine_Biosynthesis
Methylcitrate_cycle
N-Acetyl-D-Glucosamine_Utilization
N-linked_Glycosylation_in_Bacteria
Na(+)-translocating_NADH-quinone_oxidoreductase_and_rnf-like_group_of_electron_transport_complexes
NAD_and_NADP_cofactor_biosynthesis_global
Nitrate_and_nitrite_ammonification
Nitrosative_stress
P-type_ATPase_transporter_potassium_(TC_3.A.3.7.1)
Pentose_phosphate_pathway
Peptidoglycan_Biosynthesis
Phenylalanine_synthesis
Photosystem_I
Photosystem_II
Phycobilisome
Plastoquinone_Biosynthesis
Polyamine_Metabolism
polyisoprenoid_biosynthesis
Porphyrin,_Heme,_and_Siroheme_Biosynthesis
ppGpp_biosynthesis
Proline_Synthesis
Proteasome_archaeal
Proteasome_eukaryotic
Pterin_biosynthesis
Purine_conversions
Pyruvate_Alanine_Serine_Interconversions
Queuosine-Archaeosine_Biosynthesis
Resistance_to_fluoroquinolones
Respiratory_Complex_I
Respiratory_dehydrogenases_1
Ribonucleotide_reduction
Ribose_and_deoxyribose_phosphate_metabolism
Ribosome_biogenesis_bacterial
Ribosome_LSU_bacterial
Ribosome_LSU_eukaryotic_and_archaeal
Ribosome_SSU_bacterial
Ribosome_SSU_chloroplast
Ribosome_SSU_eukaryotic_and_archaeal
RNA_polymerase_archaeal
RNA_polymerase_archaeal_initiation_factors
RNA_polymerase_bacterial
RNA_polymerase_chloroplast
RNA_polymerase_I
RNA_polymerase_II
RNA_polymerase_II_initiation_factors
RNA_polymerase_III
Serine_Biosynthesis
Siderophore_Aerobactin_and_Ferrichrome_Biosynthesis
Soluble_cytochromes_and_functionally_related_electron_carriers
Succinate_dehydrogenase
Sulfate_assimilation
Sulfur_Metabolism
TCA_Cycle
Terminal_cytochrome_C_oxidases
Terminal_cytochrome_oxidases
Thiamin_biosynthesis
Threonine_synthesis
Tocopherol_Biosynthesis
Transcription_factors_bacterial
Translation_elongation_factors_eukaryotic_and_archaeal
Translation_factors_bacterial
Translation_initiation_factors_eukaryotic_and_archaeal
Transport_of_Nickel_and_Cobalt
Trehalose_biosynthesis
Tricarballylate_Utilization
tRNA_aminoacylation
tRNA_processing
tRNA_splicing
Tryptophan_synthesis
Tyrosine_synthesis
Ubiquinone_Biosynthesis
Ubiquinone_Menaquinone-cytochrome_c_reductase_complexes
UDP-N-acetylmuramate_from_Fructose-6-phosphate_Biosynthesis
Urea_decomposition
V-Type_ATP_synthase