This table shows the metadata and links to sources of the data and
citations associated with the publicly available metagenome sequences
used in the Dinsdale,et al., analysis of eight different metagenomes
collected across the northern Line Island. The links will take you to
the annotated sequences in the metagenomics SEED, CAMERA, and the NCBI
Short Read Archve. Please note that all metagenomes are currently
available to download via the ftp links, some are available in the
meta-RAST, and other links will be added as soon as they become
available. Citations for individual metagenomes will also be added as
and when they become available.
DNA sequences for all metagenomes are avaialble via anonymous FTP. You may browse the list at ftp.theseed.org or select an individual genome from the list below.
Citation:
Dinsdale, E. A., O. Pantos, S. Smriga, R. A. Edwards, L. Wegley, F.
Angly, E. Brown, M. Haynes, L. Krause, E. Sala, S. Sandin, R. Vega
Thurber, N, Knowlton, F. Azam, and F. Rohwer. 2007. Microbial ecology
of four coral atolls in the Northern Line Islands. PloS One Online 27th Feb, 2008. Available online.
For those metagenomes whose annotations are publicly available in
the meta-RAST, the link will take you to the new version of the RAST
web pages.
We have had extensive press coverage about this work. Here are a selection of press releases:
Microbial
fraction (100-0.45 micron) from water below the boundary layer (e.g.,
crevices and benthic surfaces) of Kingman Atoll (Northern Line
Islands). Sequenced at 454 Life Sciences.
Microbial
fraction (100-0.45 micron) from water below the boundary layer (e.g.,
crevices and benthic surfaces) of Christmas Atoll (a.k.a., Kirtimati;
Northern Line Islands). Sequenced at 454 Life Sciences.
Microbial
fraction (100-0.45 micron) from water below the boundary layer (e.g.,
crevices and benthic surfaces) of Palmyra (Northern Line Islands).
Sequenced at 454 Life Sciences.
Microbial
fraction (100-0.45 micron) from water below the boundary layer (e.g.,
crevices and benthic surfaces) of Fanning (a.k.a., Tabuaeran; Northern
Line Islands). Sequenced at 454 Life Sciences.
Viral
fraction from water below the boundary layer (e.g., crevices and
benthic surfaces) of Kingman Atoll (Northern Line Islands). Sequenced
at 454 Life Sciences.
Viral
fraction from water below the boundary layer (e.g., crevices and
benthic surfaces) of Christmas Atoll (a.k.a., Kirtimati; Northern Line
Islands). Sequenced at 454 Life Sciences.
Viral
fraction from water below the boundary layer (e.g., crevices and
benthic surfaces) of Palmyra (Northern Line Islands). Sequenced at 454
Life Sciences.
Viral
fraction from water below the boundary layer (e.g., crevices and
benthic surfaces) of Fanning (a.k.a., Tabuaeran; Northern Line
Islands). Sequenced at 454 Life Sciences.
